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The map label for this gene is deoC

Identifier: 189025498

GI number: 189025498

Start: 277000

End: 277656

Strand: Direct

Name: deoC

Synonym: TPASS_0264

Alternate gene names: 189025498

Gene position: 277000-277656 (Clockwise)

Preceding gene: 189025497

Following gene: 189025500

Centisome position: 24.31

GC content: 56.77

Gene sequence:

>657_bases
ATGGAACTCAATGCATATATTGACCACACGCTCTTAAGGCCCTCTGCGTCTGAGGCCGAAGTGTTGCGTCTGTGCCAAGA
GGCGCAGCACTATCGCTTCGCGTCGGTATGTGTAAATCCTTGCCATGTGGCGTTAGCAGCAGGTGCGGTGCGGGGGACGG
CGGTGCGGGTGTGCAGCGTGATCGGTTTTCCCTTTGGTACGCACGTCACGGAGGTCAAGTGCGCTGAGGCGCAGCGTGCG
TTGGACGATGGGGCGCAAGAGTTGGATATGGTCGTCCGTATAGACAAGGTGTGCGCGGGAGAAAGAGAGGTTGTAGAACG
CGAAATTGCGCAGGTTGCAGCGCGGTGTCACGCGCGCGGGGCCATTGTAAAAGTGATCGTGGAAACCGCCCTCTTAGATG
AGATGCACATCGCGTTTGCGTGTTCCTGTGTGGAGGCAGGACACGCGGATTTTATCAAAACATCCACCGGCTACGCGTCG
CGCGGGGGAACGGAAGGGGATATTCAGTGCTTTAAAAAATATCTGAAAGGTGAGACAAAGATAAAAGCCTCAGGCGGCAT
CCGTACGCGCGCGCAGGCGCAGCGTTTTATCGAGCTTGGCTGTGCACGGATTGGTACCAGCAATGGGGTGGCGATTATGG
AAGAGCGTGCCTCCTAG

Upstream 100 bases:

>100_bases
GCAGGGGAGGAGCGGATCGGCCAATTGTCCGCGGAGGCGTGGGCGCGTCCGCTTCCCCATCTAGGTACGGCTGACATTCC
GTCCCAGGGAGGATAGTGTC

Downstream 100 bases:

>100_bases
GTTGGGTGCACAGGGTGAGGGAGGGGGAATGTAGAGAAAAGGGCAGACGTCAGTCTGTGGGGGATGACTAGGTTTCGACT
AGGGATGTGGGGTGTTGCGC

Product: deoxyribose-phosphate aldolase

Products: NA

Alternate protein names: Phosphodeoxyriboaldolase; DERA; Deoxyriboaldolase

Number of amino acids: Translated: 218; Mature: 218

Protein sequence:

>218_residues
MELNAYIDHTLLRPSASEAEVLRLCQEAQHYRFASVCVNPCHVALAAGAVRGTAVRVCSVIGFPFGTHVTEVKCAEAQRA
LDDGAQELDMVVRIDKVCAGEREVVEREIAQVAARCHARGAIVKVIVETALLDEMHIAFACSCVEAGHADFIKTSTGYAS
RGGTEGDIQCFKKYLKGETKIKASGGIRTRAQAQRFIELGCARIGTSNGVAIMEERAS

Sequences:

>Translated_218_residues
MELNAYIDHTLLRPSASEAEVLRLCQEAQHYRFASVCVNPCHVALAAGAVRGTAVRVCSVIGFPFGTHVTEVKCAEAQRA
LDDGAQELDMVVRIDKVCAGEREVVEREIAQVAARCHARGAIVKVIVETALLDEMHIAFACSCVEAGHADFIKTSTGYAS
RGGTEGDIQCFKKYLKGETKIKASGGIRTRAQAQRFIELGCARIGTSNGVAIMEERAS
>Mature_218_residues
MELNAYIDHTLLRPSASEAEVLRLCQEAQHYRFASVCVNPCHVALAAGAVRGTAVRVCSVIGFPFGTHVTEVKCAEAQRA
LDDGAQELDMVVRIDKVCAGEREVVEREIAQVAARCHARGAIVKVIVETALLDEMHIAFACSCVEAGHADFIKTSTGYAS
RGGTEGDIQCFKKYLKGETKIKASGGIRTRAQAQRFIELGCARIGTSNGVAIMEERAS

Specific function: Nucleotide and deoxyribonucleotide catabolism. [C]

COG id: COG0274

COG function: function code F; Deoxyribose-phosphate aldolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the deoC/fbaB aldolase family. DeoC type 1 subfamily

Homologues:

Organism=Escherichia coli, GI1790841, Length=210, Percent_Identity=28.0952380952381, Blast_Score=74, Evalue=8e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): DEOC_TREPA (O83288)

Other databases:

- EMBL:   AE000520
- PIR:   E71347
- RefSeq:   NP_218705.1
- ProteinModelPortal:   O83288
- SMR:   O83288
- GeneID:   2611160
- GenomeReviews:   AE000520_GR
- KEGG:   tpa:TP0264
- NMPDR:   fig|243276.1.peg.264
- TIGR:   TP_0264
- HOGENOM:   HBG636421
- OMA:   GANTPEV
- ProtClustDB:   CLSK218615
- BioCyc:   TPAL243276:TP_0264-MONOMER
- BRENDA:   4.1.2.4
- GO:   GO:0005737
- HAMAP:   MF_00114
- InterPro:   IPR013785
- InterPro:   IPR011343
- InterPro:   IPR002915
- InterPro:   IPR022979
- Gene3D:   G3DSA:3.20.20.70
- PANTHER:   PTHR10889
- PIRSF:   PIRSF001357
- TIGRFAMs:   TIGR00126

Pfam domain/function: PF01791 DeoC

EC number: =4.1.2.4

Molecular weight: Translated: 23470; Mature: 23470

Theoretical pI: Translated: 7.09; Mature: 7.09

Prosite motif: NA

Important sites: ACT_SITE 153-153 ACT_SITE 182-182

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
6.9 %Cys+Met (Translated Protein)
5.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
6.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELNAYIDHTLLRPSASEAEVLRLCQEAQHYRFASVCVNPCHVALAAGAVRGTAVRVCSV
CCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
IGFPFGTHVTEVKCAEAQRALDDGAQELDMVVRIDKVCAGEREVVEREIAQVAARCHARG
HCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCH
AIVKVIVETALLDEMHIAFACSCVEAGHADFIKTSTGYASRGGTEGDIQCFKKYLKGETK
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCHHHHHHHHHHCCCCE
IKASGGIRTRAQAQRFIELGCARIGTSNGVAIMEERAS
EECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCC
>Mature Secondary Structure
MELNAYIDHTLLRPSASEAEVLRLCQEAQHYRFASVCVNPCHVALAAGAVRGTAVRVCSV
CCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
IGFPFGTHVTEVKCAEAQRALDDGAQELDMVVRIDKVCAGEREVVEREIAQVAARCHARG
HCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCH
AIVKVIVETALLDEMHIAFACSCVEAGHADFIKTSTGYASRGGTEGDIQCFKKYLKGETK
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCHHHHHHHHHHCCCCE
IKASGGIRTRAQAQRFIELGCARIGTSNGVAIMEERAS
EECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9665876