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The map label for this gene is yodJ [H]

Identifier: 189025454

GI number: 189025454

Start: 227360

End: 228142

Strand: Direct

Name: yodJ [H]

Synonym: TPASS_0221

Alternate gene names: 189025454

Gene position: 227360-228142 (Clockwise)

Preceding gene: 189025453

Following gene: 189025455

Centisome position: 19.95

GC content: 55.94

Gene sequence:

>783_bases
GTGGCGCGTTGGAACTGCGTGTGCGTATGCAGGGTACGTGTTAGTTGCTCTGGGAAATGCGGTCTCGCCGCAGGGCGTGG
ATCGGGTGGATCTGCATCGTGTGCGTGCTGCTGCGAAGCGCGCGGCGCTTCCTGCGCGCCTTGTACGCGTTTGTGTGCAC
AGGGGAGGGAGTTTTTGCAAGAGCTCGACGCGGTACTTACCACGGAGGGGTATCTGTTGCGTTTGGTTGACAAGAAACAT
CCCCTGCCAGAAACGTTCGTGCCGAAGCATCTGGTGCCGGTGCGTGAGCAGTGGCTCTTTTTTTCAAAGGGGAGGTCGCT
CCTTTTAACTAAGATTGCGTACGAAGCGTTACATCAGCTGATTCAGGCGGCTGCGCGTGACGGGGTGGCACTGTCCGTTG
GTTCTGCCTATCGCTCTTTTGCGTATCAGAAAAAGTTGTTCTCCTGGTATGCGCAGGAGCATGGCATGCAGGAGGCTATG
CGTTTTTCCGCGCGAGAAGGAACAAGTCAGCACCAGTTGGGGACGGTAGTGGATTTCGGTTCTATCACGCCGGCGTTTGC
ACGGAGTGATGCAGGGAGGTGGACGCAGCGCAACGCCCATCGTTTTGGATGGTCGCTGTCTTTTCCCCCTGGTTACGAGC
AGGTGACGGGGTATGTATGGGAGCCGTGGCATTTCCGTTATGTAGGGGTGCGTGCGTGCGCACTCCAAAAGAAGTGGTTT
GAGGATATCCAGCAATACATGCTTGGATTTATTCATGAATGGAAGGTGAACGCATCGTCGTGA

Upstream 100 bases:

>100_bases
GTGCATTCTTAATCCTTCTGAGAGCGTACGCAGAGCGATAGAGCTGACCGGCTTCTCTGAAATGTTCACGGTAATTAAAT
CATTAGATGAGTTGGACTAA

Downstream 100 bases:

>100_bases
GGAGACCGAATGTGGAAGCGGGGTGTGGGCGCACTATTGTGGGGTATGGTGTTGTTGCGCTCTTTTGTGGCATATGCGGA
TTCGCAGGCGGCTACTGGTG

Product: D,D-carboxypeptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 259

Protein sequence:

>260_residues
MARWNCVCVCRVRVSCSGKCGLAAGRGSGGSASCACCCEARGASCAPCTRLCAQGREFLQELDAVLTTEGYLLRLVDKKH
PLPETFVPKHLVPVREQWLFFSKGRSLLLTKIAYEALHQLIQAAARDGVALSVGSAYRSFAYQKKLFSWYAQEHGMQEAM
RFSAREGTSQHQLGTVVDFGSITPAFARSDAGRWTQRNAHRFGWSLSFPPGYEQVTGYVWEPWHFRYVGVRACALQKKWF
EDIQQYMLGFIHEWKVNASS

Sequences:

>Translated_260_residues
MARWNCVCVCRVRVSCSGKCGLAAGRGSGGSASCACCCEARGASCAPCTRLCAQGREFLQELDAVLTTEGYLLRLVDKKH
PLPETFVPKHLVPVREQWLFFSKGRSLLLTKIAYEALHQLIQAAARDGVALSVGSAYRSFAYQKKLFSWYAQEHGMQEAM
RFSAREGTSQHQLGTVVDFGSITPAFARSDAGRWTQRNAHRFGWSLSFPPGYEQVTGYVWEPWHFRYVGVRACALQKKWF
EDIQQYMLGFIHEWKVNASS
>Mature_259_residues
ARWNCVCVCRVRVSCSGKCGLAAGRGSGGSASCACCCEARGASCAPCTRLCAQGREFLQELDAVLTTEGYLLRLVDKKHP
LPETFVPKHLVPVREQWLFFSKGRSLLLTKIAYEALHQLIQAAARDGVALSVGSAYRSFAYQKKLFSWYAQEHGMQEAMR
FSAREGTSQHQLGTVVDFGSITPAFARSDAGRWTQRNAHRFGWSLSFPPGYEQVTGYVWEPWHFRYVGVRACALQKKWFE
DIQQYMLGFIHEWKVNASS

Specific function: Unknown

COG id: COG1876

COG function: function code M; D-alanyl-D-alanine carboxypeptidase

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M15B family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009045
- InterPro:   IPR003709 [H]

Pfam domain/function: PF02557 VanY [H]

EC number: NA

Molecular weight: Translated: 29194; Mature: 29062

Theoretical pI: Translated: 8.95; Mature: 8.95

Prosite motif: PS00022 EGF_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
5.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARWNCVCVCRVRVSCSGKCGLAAGRGSGGSASCACCCEARGASCAPCTRLCAQGREFLQ
CCCCCEEEEEEEEEECCCCCCCEECCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHH
ELDAVLTTEGYLLRLVDKKHPLPETFVPKHLVPVREQWLFFSKGRSLLLTKIAYEALHQL
HHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHH
IQAAARDGVALSVGSAYRSFAYQKKLFSWYAQEHGMQEAMRFSAREGTSQHQLGTVVDFG
HHHHHCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCEEECC
SITPAFARSDAGRWTQRNAHRFGWSLSFPPGYEQVTGYVWEPWHFRYVGVRACALQKKWF
CCCHHHHCCCCCCHHHCCHHHCCEECCCCCCHHHHCCCEECCEEEEEHHHHHHHHHHHHH
EDIQQYMLGFIHEWKVNASS
HHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
ARWNCVCVCRVRVSCSGKCGLAAGRGSGGSASCACCCEARGASCAPCTRLCAQGREFLQ
CCCCEEEEEEEEEECCCCCCCEECCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHH
ELDAVLTTEGYLLRLVDKKHPLPETFVPKHLVPVREQWLFFSKGRSLLLTKIAYEALHQL
HHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHH
IQAAARDGVALSVGSAYRSFAYQKKLFSWYAQEHGMQEAMRFSAREGTSQHQLGTVVDFG
HHHHHCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCEEECC
SITPAFARSDAGRWTQRNAHRFGWSLSFPPGYEQVTGYVWEPWHFRYVGVRACALQKKWF
CCCHHHHCCCCCCHHHCCHHHCCEECCCCCCHHHHCCCEECCEEEEEHHHHHHHHHHHHH
EDIQQYMLGFIHEWKVNASS
HHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9734814; 9384377 [H]