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The map label for this gene is rpmC

Identifier: 189025430

GI number: 189025430

Start: 210462

End: 210680

Strand: Direct

Name: rpmC

Synonym: TPASS_0197

Alternate gene names: 189025430

Gene position: 210462-210680 (Clockwise)

Preceding gene: 189025429

Following gene: 189025431

Centisome position: 18.47

GC content: 45.21

Gene sequence:

>219_bases
ATGGGTCGGGGTGGGTGTGCGCAATTATCATATTCTGAGCTTCTTTCGAGGCGTCGTGAGCTTGAGAGAAAATACTTGGA
TCTGCGCTTTCAGCTTGTTGTTGAGCATGTTGACAACAAGCTTATGAAAAGGATTCTCCGTCGTCAAATTGCGGCGGTTA
ATACTTTTTTGCGACATAAAGAGTTGACTGAACTAGAAAAGAGAGGGGTTCGGGAGTGA

Upstream 100 bases:

>100_bases
GAGCGTTGGCAGAGCAGGCGATGCTTCTGGCAGGAAGTAAACTTCCAATCAAGACGCGGTTTGCCGAACGCGTACAGGAA
ATTTAGAGGGGAGCTGTAAG

Downstream 100 bases:

>100_bases
TGGAGCAGTGTACGGTGAAAAGGCCTGAGCGGCGCACCCTTGTCGGGCTGGTGACCAGTGACAAGATGCACAAAACCGTT
ACGGTTCGGATTACGACAAA

Product: 50S ribosomal protein L29

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 72; Mature: 71

Protein sequence:

>72_residues
MGRGGCAQLSYSELLSRRRELERKYLDLRFQLVVEHVDNKLMKRILRRQIAAVNTFLRHKELTELEKRGVRE

Sequences:

>Translated_72_residues
MGRGGCAQLSYSELLSRRRELERKYLDLRFQLVVEHVDNKLMKRILRRQIAAVNTFLRHKELTELEKRGVRE
>Mature_71_residues
GRGGCAQLSYSELLSRRRELERKYLDLRFQLVVEHVDNKLMKRILRRQIAAVNTFLRHKELTELEKRGVRE

Specific function: Unknown

COG id: COG0255

COG function: function code J; Ribosomal protein L29

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L29P family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL29_TREPA (O83227)

Other databases:

- EMBL:   AE000520
- PIR:   G71355
- RefSeq:   NP_218636.1
- ProteinModelPortal:   O83227
- SMR:   O83227
- IntAct:   O83227
- MINT:   MINT-6481095
- GeneID:   2611805
- GenomeReviews:   AE000520_GR
- KEGG:   tpa:TP0197
- NMPDR:   fig|243276.1.peg.195
- TIGR:   TP_0197
- HOGENOM:   HBG250922
- OMA:   FKAVVGH
- ProtClustDB:   PRK00306
- BioCyc:   TPAL243276:TP_0197-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00374_B
- InterPro:   IPR001854
- Gene3D:   G3DSA:1.10.287.310
- TIGRFAMs:   TIGR00012

Pfam domain/function: PF00831 Ribosomal_L29; SSF46561 Ribosomal_L29

EC number: NA

Molecular weight: Translated: 8654; Mature: 8523

Theoretical pI: Translated: 10.95; Mature: 10.95

Prosite motif: PS00579 RIBOSOMAL_L29

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGRGGCAQLSYSELLSRRRELERKYLDLRFQLVVEHVDNKLMKRILRRQIAAVNTFLRHK
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ELTELEKRGVRE
HHHHHHHCCCCC
>Mature Secondary Structure 
GRGGCAQLSYSELLSRRRELERKYLDLRFQLVVEHVDNKLMKRILRRQIAAVNTFLRHK
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ELTELEKRGVRE
HHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9665876