Definition Treponema pallidum subsp. pallidum SS14, complete genome.
Accession NC_010741
Length 1,139,457

Click here to switch to the map view.

The map label for this gene is pyrH [H]

Identifier: 189025333

GI number: 189025333

Start: 107370

End: 108125

Strand: Reverse

Name: pyrH [H]

Synonym: TPASS_0099

Alternate gene names: 189025333

Gene position: 108125-107370 (Counterclockwise)

Preceding gene: 189025336

Following gene: 189025332

Centisome position: 9.49

GC content: 55.56

Gene sequence:

>756_bases
ATGGTCACCGTTCTGTCACTTGGAGGTTCCATCGTTGCGCCTGAGACGCCCGACATAGAGCTTCTCGGGCGGTTCGTTCG
TTCCGTTCAACGGTACCTATACGAAGACGCCTCACGGAAGCTCATTGTCGTTTCAGGCGGTGGTGCACCTGCGCGCACTT
ATCAAAACGCCTATCGTGCGCTACGCCGGAGCCTGTCTTCTCCGGCCTGTGCGAAACCTGCGCACGAGGGCGATAATCAG
GAAGACAGGGAGCTGTATGCCACGGCCGAACACGTTGAACTTGACTGGATTGGCATCATGGCTACGCGTTTGAACGCGCA
GCTGCTCAAATCCCTTTTTGGAATCCTTTGTCCAAATCCGGTCGTGTATGACCCGACTGCGGCGAACGTTTTTTCAGGTC
AGGTGCTCGTTGCTGCTGGTTGGAAACCGGGTTTTTCCACCGACACCGACGCTGTGCTCCTTGCAGAGCGTTATTCTGCA
AAGACGGTTATTAACCTTTCCGACGTTGCGCATGTGTACACGGGGGATCCTCGTTCAGACAAGGATGCGAAGGCGCTCAC
ATCCCTCTCCTGGGATGATTTCCTCCTCCTTGTCGACAAGGAGTGGGTACCGGGCAGCCATGTCCCCTTTGACCCAGTCG
CTAGTGTCCGGGCAAAAAAGTCGGGAATTCAGGTCATTTGCGCAACAGGGCGTGACTTACCGAATTTGGAGCGCATCCTG
AACAGGCAAGAGTTCGTGGGGACCACCATTGGGTAA

Upstream 100 bases:

>100_bases
ACACTCCATCGCCCCGTGCACGCTGGGACGCAATGCCAGATACACACAGGGCCTGGATCCAAAGGGTCTCTTTGCGTTAC
GATGCCGGCGAGAGGGTTTC

Downstream 100 bases:

>100_bases
ACGATGAGCGAGCGCACTGTTCCTGACCATTACGCCATACTGGGCGTTGCTGCCGATGCTTCTGAGGAACACATTAAGAA
AGCTTTTCGCGCGCAGGCGC

Product: uridylate kinase

Products: NA

Alternate protein names: UK; Uridine monophosphate kinase; UMP kinase; UMPK [H]

Number of amino acids: Translated: 251; Mature: 251

Protein sequence:

>251_residues
MVTVLSLGGSIVAPETPDIELLGRFVRSVQRYLYEDASRKLIVVSGGGAPARTYQNAYRALRRSLSSPACAKPAHEGDNQ
EDRELYATAEHVELDWIGIMATRLNAQLLKSLFGILCPNPVVYDPTAANVFSGQVLVAAGWKPGFSTDTDAVLLAERYSA
KTVINLSDVAHVYTGDPRSDKDAKALTSLSWDDFLLLVDKEWVPGSHVPFDPVASVRAKKSGIQVICATGRDLPNLERIL
NRQEFVGTTIG

Sequences:

>Translated_251_residues
MVTVLSLGGSIVAPETPDIELLGRFVRSVQRYLYEDASRKLIVVSGGGAPARTYQNAYRALRRSLSSPACAKPAHEGDNQ
EDRELYATAEHVELDWIGIMATRLNAQLLKSLFGILCPNPVVYDPTAANVFSGQVLVAAGWKPGFSTDTDAVLLAERYSA
KTVINLSDVAHVYTGDPRSDKDAKALTSLSWDDFLLLVDKEWVPGSHVPFDPVASVRAKKSGIQVICATGRDLPNLERIL
NRQEFVGTTIG
>Mature_251_residues
MVTVLSLGGSIVAPETPDIELLGRFVRSVQRYLYEDASRKLIVVSGGGAPARTYQNAYRALRRSLSSPACAKPAHEGDNQ
EDRELYATAEHVELDWIGIMATRLNAQLLKSLFGILCPNPVVYDPTAANVFSGQVLVAAGWKPGFSTDTDAVLLAERYSA
KTVINLSDVAHVYTGDPRSDKDAKALTSLSWDDFLLLVDKEWVPGSHVPFDPVASVRAKKSGIQVICATGRDLPNLERIL
NRQEFVGTTIG

Specific function: Catalyzes the reversible phosphorylation of UMP to UDP [H]

COG id: COG0528

COG function: function code F; Uridylate kinase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UMP kinase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001048
- InterPro:   IPR011817
- InterPro:   IPR011818 [H]

Pfam domain/function: PF00696 AA_kinase [H]

EC number: =2.7.4.22 [H]

Molecular weight: Translated: 27299; Mature: 27299

Theoretical pI: Translated: 6.13; Mature: 6.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVTVLSLGGSIVAPETPDIELLGRFVRSVQRYLYEDASRKLIVVSGGGAPARTYQNAYRA
CEEEEECCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHH
LRRSLSSPACAKPAHEGDNQEDRELYATAEHVELDWIGIMATRLNAQLLKSLFGILCPNP
HHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHHCCCC
VVYDPTAANVFSGQVLVAAGWKPGFSTDTDAVLLAERYSAKTVINLSDVAHVYTGDPRSD
EEECCCCCCEECCCEEEEECCCCCCCCCCCEEEEEECCCCCEEEEHHHHEEEECCCCCCC
KDAKALTSLSWDDFLLLVDKEWVPGSHVPFDPVASVRAKKSGIQVICATGRDLPNLERIL
CHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCHHHHHHH
NRQEFVGTTIG
CHHHHHCCCCC
>Mature Secondary Structure
MVTVLSLGGSIVAPETPDIELLGRFVRSVQRYLYEDASRKLIVVSGGGAPARTYQNAYRA
CEEEEECCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHH
LRRSLSSPACAKPAHEGDNQEDRELYATAEHVELDWIGIMATRLNAQLLKSLFGILCPNP
HHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHHCCCC
VVYDPTAANVFSGQVLVAAGWKPGFSTDTDAVLLAERYSAKTVINLSDVAHVYTGDPRSD
EEECCCCCCEECCCEEEEECCCCCCCCCCCEEEEEECCCCCEEEEHHHHEEEECCCCCCC
KDAKALTSLSWDDFLLLVDKEWVPGSHVPFDPVASVRAKKSGIQVICATGRDLPNLERIL
CHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCHHHHHHH
NRQEFVGTTIG
CHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA