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The map label for this gene is rpoE [C]

Identifier: 189025326

GI number: 189025326

Start: 101619

End: 102107

Strand: Direct

Name: rpoE [C]

Synonym: TPASS_0092

Alternate gene names: 189025326

Gene position: 101619-102107 (Clockwise)

Preceding gene: 189025325

Following gene: 189025327

Centisome position: 8.92

GC content: 54.19

Gene sequence:

>489_bases
ATGTACGAGCAGCTTGTGCCAGTGCTCTACCGCGTAGCGTACAACGTGGTGCGCGAGGAGGACATCGCTGAGGGGCTCTG
CCATGATGCCTTCATTGCAATGACAGAAAAGAGGATGGAGTTTCCGTCTCTGTCGGACGCAAAGTATTGGTTGATCCGCG
TGGTGAAAAATGCCTCGTTAAATTACGCTAAGCGTCGTGTACGTGAGCGTCATTCTTGTGAGCAAGCGTCGCGCGAGCAT
GTGTGCGAGCCGGATACCGGTGAGCTTCGCTTGTTAAGAATAGAGACGATTGAGCAGGTGCGCGCGGCCTTAGATCGACT
GCCCGAGCACCTCCGTGTGGTTTTGCAGTTGCGCGAGTATGGGGACTTAAACTACAAGGAGATCGGACGTATCCTGGGCA
TCAGCGAGGGGAATGTAAAGGTGAGGGTGTTCAGAGCGCGCGAACGATTAGCGAAGTATTTAGGAGAGACGGATGCGTAC
CTGTCCTGA

Upstream 100 bases:

>100_bases
CATCTTGGGACTATTTGGAAGCGCGTGTAACATTTTGGGAGATACATTGTTGCATGAGCAGGAGCTTTTAAGAGCACAGG
ATGATGCAGATTTTAAGCTC

Downstream 100 bases:

>100_bases
TTGTGCTGCTTGGTGTGCTTATGTGGACGGAGAAGGTTCGCAACTGCAACGCCGTGAGATGTGCGCGCATCTGCAGGGTT
GCACACACTGTGCCACGTGT

Product: RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: ECF Subfamily RNA Polymerase Sigma-24 Factor; Sigma-70 Region 4 Family; RNA Polymerase ECF-Type Sigma Factor; RNA Polymerase Sigma-E Factor; RNA Polymerase Sigma Factor; RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma Factor RpoE; RNA Polymerase Sigma Subunit ECF Family; RNA Polymerase Factor Sigma C; RNA Polymerase Sigma-24 Subunit Ecf Subfamily; ECF Family RNA Polymerase Sigma-70 Factor; RNA Polymerase Sigma-W Factor; Fis Family Transcriptional Regulator

Number of amino acids: Translated: 162; Mature: 162

Protein sequence:

>162_residues
MYEQLVPVLYRVAYNVVREEDIAEGLCHDAFIAMTEKRMEFPSLSDAKYWLIRVVKNASLNYAKRRVRERHSCEQASREH
VCEPDTGELRLLRIETIEQVRAALDRLPEHLRVVLQLREYGDLNYKEIGRILGISEGNVKVRVFRARERLAKYLGETDAY
LS

Sequences:

>Translated_162_residues
MYEQLVPVLYRVAYNVVREEDIAEGLCHDAFIAMTEKRMEFPSLSDAKYWLIRVVKNASLNYAKRRVRERHSCEQASREH
VCEPDTGELRLLRIETIEQVRAALDRLPEHLRVVLQLREYGDLNYKEIGRILGISEGNVKVRVFRARERLAKYLGETDAY
LS
>Mature_162_residues
MYEQLVPVLYRVAYNVVREEDIAEGLCHDAFIAMTEKRMEFPSLSDAKYWLIRVVKNASLNYAKRRVRERHSCEQASREH
VCEPDTGELRLLRIETIEQVRAALDRLPEHLRVVLQLREYGDLNYKEIGRILGISEGNVKVRVFRARERLAKYLGETDAY
LS

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Is Involved In Heat Shock And Oxidative Stress Response; It Is Believed To Control Protein Processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18997; Mature: 18997

Theoretical pI: Translated: 8.06; Mature: 8.06

Prosite motif: PS00622 HTH_LUXR_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYEQLVPVLYRVAYNVVREEDIAEGLCHDAFIAMTEKRMEFPSLSDAKYWLIRVVKNASL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCH
NYAKRRVRERHSCEQASREHVCEPDTGELRLLRIETIEQVRAALDRLPEHLRVVLQLREY
HHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GDLNYKEIGRILGISEGNVKVRVFRARERLAKYLGETDAYLS
CCCCHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MYEQLVPVLYRVAYNVVREEDIAEGLCHDAFIAMTEKRMEFPSLSDAKYWLIRVVKNASL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCH
NYAKRRVRERHSCEQASREHVCEPDTGELRLLRIETIEQVRAALDRLPEHLRVVLQLREY
HHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GDLNYKEIGRILGISEGNVKVRVFRARERLAKYLGETDAYLS
CCCCHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA