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The map label for this gene is rnpA

Identifier: 188587523

GI number: 188587523

Start: 3164592

End: 3164939

Strand: Reverse

Name: rnpA

Synonym: Nther_2934

Alternate gene names: 188587523

Gene position: 3164939-3164592 (Counterclockwise)

Preceding gene: 188587524

Following gene: 188587522

Centisome position: 99.98

GC content: 29.89

Gene sequence:

>348_bases
ATGTCCCAAATAGTAACTCTTAAAAAAAATTATCAATTTAGACGTGTATTTAGATACGGCCAATCCTATGCAACCAAGTA
TATAGTGTTATTTGTTTTGGAAAATTCTCTTAATATTAATCGTGTTGGTTTTTCTGTAGGTAAAAAAGTAGGAAATAGTG
TAACTAGAAACAGGGTTAAACGGTTACTGCGAGAAGTTTATCGTTTAAATAACCCCAACATGATGCAGGGATATGATCTG
ATTTTATTGGCCAGATTTAGAGCTGACGAATTAGATTATCATAAATGTCAGAGGGAATTTATAAGATTAACAAAAAAGTC
TAAATTATTACAAAAAAATGTGATATGA

Upstream 100 bases:

>100_bases
ATAGTTTATAGCTAATAATTAACTGACAATAATGTTAGAAACAATAGATGGTTAGAAAGATGAAATAGCTATCATTTGTT
ATTACGAAGGAGTTTTGGTT

Downstream 100 bases:

>100_bases
TAAAAAGTGAAAAATATCTTAATATAAGGTTGAATACTTTATGATTAAAAAAATTATCTTCATCTTTATCAGAGCTTATC
AAAGGATAATATCTCCTGTT

Product: ribonuclease P protein component

Products: NA

Alternate protein names: RNase P protein; RNaseP protein; Protein C5

Number of amino acids: Translated: 115; Mature: 114

Protein sequence:

>115_residues
MSQIVTLKKNYQFRRVFRYGQSYATKYIVLFVLENSLNINRVGFSVGKKVGNSVTRNRVKRLLREVYRLNNPNMMQGYDL
ILLARFRADELDYHKCQREFIRLTKKSKLLQKNVI

Sequences:

>Translated_115_residues
MSQIVTLKKNYQFRRVFRYGQSYATKYIVLFVLENSLNINRVGFSVGKKVGNSVTRNRVKRLLREVYRLNNPNMMQGYDL
ILLARFRADELDYHKCQREFIRLTKKSKLLQKNVI
>Mature_114_residues
SQIVTLKKNYQFRRVFRYGQSYATKYIVLFVLENSLNINRVGFSVGKKVGNSVTRNRVKRLLREVYRLNNPNMMQGYDLI
LLARFRADELDYHKCQREFIRLTKKSKLLQKNVI

Specific function: RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-lead

COG id: COG0594

COG function: function code J; RNase P protein component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rnpA family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNPA_NATTJ (B2A474)

Other databases:

- EMBL:   CP001034
- RefSeq:   YP_001919068.1
- ProteinModelPortal:   B2A474
- SMR:   B2A474
- GeneID:   6317170
- GenomeReviews:   CP001034_GR
- KEGG:   nth:Nther_2934
- HOGENOM:   HBG728160
- OMA:   CAEMERV
- HAMAP:   MF_00227
- InterPro:   IPR020568
- InterPro:   IPR014721
- InterPro:   IPR000100
- Gene3D:   G3DSA:3.30.230.10
- ProDom:   PD003629
- TIGRFAMs:   TIGR00188

Pfam domain/function: PF00825 Ribonuclease_P; SSF54211 Ribosomal_S5_D2-typ_fold

EC number: =3.1.26.5

Molecular weight: Translated: 13765; Mature: 13634

Theoretical pI: Translated: 11.20; Mature: 11.20

Prosite motif: PS00648 RIBONUCLEASE_P

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQIVTLKKNYQFRRVFRYGQSYATKYIVLFVLENSLNINRVGFSVGKKVGNSVTRNRVK
CCCEEEHHCCHHHHHHHHHHHHHHHHHHHEEEECCCCCCHHHHHHHHHHHCCHHHHHHHH
RLLREVYRLNNPNMMQGYDLILLARFRADELDYHKCQREFIRLTKKSKLLQKNVI
HHHHHHHHCCCCCCCCCCHHEEEEHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SQIVTLKKNYQFRRVFRYGQSYATKYIVLFVLENSLNINRVGFSVGKKVGNSVTRNRVK
CCEEEHHCCHHHHHHHHHHHHHHHHHHHEEEECCCCCCHHHHHHHHHHHCCHHHHHHHH
RLLREVYRLNNPNMMQGYDLILLARFRADELDYHKCQREFIRLTKKSKLLQKNVI
HHHHHHHHCCCCCCCCCCHHEEEEHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA