Click here to switch to the map view.

The map label for this gene is yddE [C]

Identifier: 188587470

GI number: 188587470

Start: 3111000

End: 3111902

Strand: Reverse

Name: yddE [C]

Synonym: Nther_2880

Alternate gene names: 188587470

Gene position: 3111902-3111000 (Counterclockwise)

Preceding gene: 188587471

Following gene: 188587469

Centisome position: 98.31

GC content: 40.2

Gene sequence:

>903_bases
TTGAAAGCAAAATTTTTTCAGGTTGATTCTTTTACAGAGACATCTTTTGGTGGCAACCCGGCAGGGGTAATTATCTCTGA
ACAAGAGTTACCTCGTGAGACGATGCAAAACTTGGCCAAGGAAGTCAATGCTTCTGAGACGGCTTTTGTTTTGCCGGGTT
TGGAGTTTAGATTCTTCACTCCTACAGTAGAAGTTTCCTACTGTGGACATGCAACAGTAGCGGCTTTTCATGCTTTAGTG
ACTTCTGGATACCTAACACCAGATCAAGATGGTACTACCTATACTCAAACTACTCAAGAAGGATCTTTTCCGGTGACTGT
TTATCCCAGAGGAAATGGTTCTCCCTTAATATGCACTTGGAAACATGATAAAGATATCGAGATGGGAGATAAGGTTTCTC
CTTATGTATTAGAGGACCTGTTTTATATTAAAAATTCAGTGAATGCTACTTTTACTAGTGTTAATGAGTTTTGCCCTATG
GATTTGCCTTTACAAGTGATTAATGTCGGGATTTCTGACCTTCATGTTCCCGTGAAAGACGTAAAAACCCTACAAGATTT
AGTTCCTCGCTTAGACAGATTAGCACTATTATCAAGAAAAATGGATATTGTAGGACTACATTTATTTACTTTTTCTAGTC
CTCGAGGCGGGGACTTATTTGTCCGAAACTTCGCTCCCTTAGTAGGAATAGATGAGGAGGCAGCAACTGGCTCTGCAAAT
AGTGGATTAGCTTACTATTTGGCCCAATACGGAGCCGTTGATTATGGGAAAAGATTACTAATTGATCAGGGTGACACTCT
AGGTAGGCCTTCCAGAATGTATATAACTCCAGAAGAACAGGGAAGTGTACTGGTTGAAGGAACTGGTGTTACTATTTTCT
CAGGGCAGGTGGATATTTTATAA

Upstream 100 bases:

>100_bases
ACTGGAGCTCGAACAAAGGGTGTTTGAATTTTTGAAAACTAGTACATGAACAGAGATACGATTATAATTATGAACCCTTG
ATTTGCAAAGGAGGTTAACT

Downstream 100 bases:

>100_bases
CAAAAGTACTAGTTTTATAATAAAATATGCCCACATTTATATTAATAAAATTATCAGGAAGGAATTAACAAACCCTCCGT
AGAAATTTTTACTAAAATCA

Product: phenazine biosynthesis protein PhzF family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MKAKFFQVDSFTETSFGGNPAGVIISEQELPRETMQNLAKEVNASETAFVLPGLEFRFFTPTVEVSYCGHATVAAFHALV
TSGYLTPDQDGTTYTQTTQEGSFPVTVYPRGNGSPLICTWKHDKDIEMGDKVSPYVLEDLFYIKNSVNATFTSVNEFCPM
DLPLQVINVGISDLHVPVKDVKTLQDLVPRLDRLALLSRKMDIVGLHLFTFSSPRGGDLFVRNFAPLVGIDEEAATGSAN
SGLAYYLAQYGAVDYGKRLLIDQGDTLGRPSRMYITPEEQGSVLVEGTGVTIFSGQVDIL

Sequences:

>Translated_300_residues
MKAKFFQVDSFTETSFGGNPAGVIISEQELPRETMQNLAKEVNASETAFVLPGLEFRFFTPTVEVSYCGHATVAAFHALV
TSGYLTPDQDGTTYTQTTQEGSFPVTVYPRGNGSPLICTWKHDKDIEMGDKVSPYVLEDLFYIKNSVNATFTSVNEFCPM
DLPLQVINVGISDLHVPVKDVKTLQDLVPRLDRLALLSRKMDIVGLHLFTFSSPRGGDLFVRNFAPLVGIDEEAATGSAN
SGLAYYLAQYGAVDYGKRLLIDQGDTLGRPSRMYITPEEQGSVLVEGTGVTIFSGQVDIL
>Mature_300_residues
MKAKFFQVDSFTETSFGGNPAGVIISEQELPRETMQNLAKEVNASETAFVLPGLEFRFFTPTVEVSYCGHATVAAFHALV
TSGYLTPDQDGTTYTQTTQEGSFPVTVYPRGNGSPLICTWKHDKDIEMGDKVSPYVLEDLFYIKNSVNATFTSVNEFCPM
DLPLQVINVGISDLHVPVKDVKTLQDLVPRLDRLALLSRKMDIVGLHLFTFSSPRGGDLFVRNFAPLVGIDEEAATGSAN
SGLAYYLAQYGAVDYGKRLLIDQGDTLGRPSRMYITPEEQGSVLVEGTGVTIFSGQVDIL

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family [H]

Homologues:

Organism=Homo sapiens, GI62177133, Length=311, Percent_Identity=29.5819935691318, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI74316009, Length=269, Percent_Identity=31.2267657992565, Blast_Score=86, Evalue=3e-17,
Organism=Escherichia coli, GI1787737, Length=316, Percent_Identity=30.6962025316456, Blast_Score=116, Evalue=2e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003719 [H]

Pfam domain/function: PF02567 PhzC-PhzF [H]

EC number: NA

Molecular weight: Translated: 32831; Mature: 32831

Theoretical pI: Translated: 4.48; Mature: 4.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAKFFQVDSFTETSFGGNPAGVIISEQELPRETMQNLAKEVNASETAFVLPGLEFRFFT
CCCEEEEECCCCCCCCCCCCEEEEEECHHCCHHHHHHHHHHCCCCCEEEEECCCEEEEEC
PTVEVSYCGHATVAAFHALVTSGYLTPDQDGTTYTQTTQEGSFPVTVYPRGNGSPLICTW
CEEEEEECCCHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCEEEEEE
KHDKDIEMGDKVSPYVLEDLFYIKNSVNATFTSVNEFCPMDLPLQVINVGISDLHVPVKD
CCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEHHHCCCCCCCHHHEECCHHHEECCHHH
VKTLQDLVPRLDRLALLSRKMDIVGLHLFTFSSPRGGDLFVRNFAPLVGIDEEAATGSAN
HHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCEEEECCCCEECCCCHHCCCCCC
SGLAYYLAQYGAVDYGKRLLIDQGDTLGRPSRMYITPEEQGSVLVEGTGVTIFSGQVDIL
CCHHHHHHHHCCCCCCCEEEEECCCCCCCCCEEEECCCCCCCEEEEECCEEEECCEEECC
>Mature Secondary Structure
MKAKFFQVDSFTETSFGGNPAGVIISEQELPRETMQNLAKEVNASETAFVLPGLEFRFFT
CCCEEEEECCCCCCCCCCCCEEEEEECHHCCHHHHHHHHHHCCCCCEEEEECCCEEEEEC
PTVEVSYCGHATVAAFHALVTSGYLTPDQDGTTYTQTTQEGSFPVTVYPRGNGSPLICTW
CEEEEEECCCHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCEEEEEE
KHDKDIEMGDKVSPYVLEDLFYIKNSVNATFTSVNEFCPMDLPLQVINVGISDLHVPVKD
CCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEHHHCCCCCCCHHHEECCHHHEECCHHH
VKTLQDLVPRLDRLALLSRKMDIVGLHLFTFSSPRGGDLFVRNFAPLVGIDEEAATGSAN
HHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCEEEECCCCEECCCCHHCCCCCC
SGLAYYLAQYGAVDYGKRLLIDQGDTLGRPSRMYITPEEQGSVLVEGTGVTIFSGQVDIL
CCHHHHHHHHCCCCCCCEEEEECCCCCCCCCEEEECCCCCCCEEEEECCEEEECCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11466286 [H]