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The map label for this gene is ydcM [C]

Identifier: 188587119

GI number: 188587119

Start: 2708706

End: 2709686

Strand: Reverse

Name: ydcM [C]

Synonym: Nther_2515

Alternate gene names: 188587119

Gene position: 2709686-2708706 (Counterclockwise)

Preceding gene: 188587120

Following gene: 188587118

Centisome position: 85.6

GC content: 32.11

Gene sequence:

>981_bases
TTGTCTAAAATAGATTGCAACAACCATCTAAATAGAGAACTAAAGAAAGAACTTGTATGGCTTAAAGAAGTAGATAAGTT
CGCCTTGACTAATTCTATTTACAATCTTGATACTGCTTTTCAAAATTTCTTTAGACGAGTAAAACAAGGAAATAAACAGG
CTGGATTTCCTAAATTCAAGAGTAAGCACATTAATAAATTCAGCTATACAACCAATTTCACAAACAACAATATAGAAGTT
AATTTTTCTGAAAAGAGAATCAAATTACCTAAACTGAAGTGGGTAGAAGCTAAAGTACATAGGGAATTTGACGGAAAAAT
AAAGTCTGCAACAATATCTAAAAACCCCAGTGGCAGATACTTTGTAAGTATTCTTGTTGATACAGAGATAGCAGAGTTAC
CCAGGGTGAACAAGAATATAGGTTTTGACCTGGGTATTAGTGATTTTCTAATCGATAGCGATGGAAATAAGATATCTAAT
CCTAAAAATCTATCCAAATACGAACGGAAATTAGCCAAACTGCAAATACAACTATCCAAGAAGCAAAAAGGCAGTAACAA
TAGAAACAAGATGAGAATTAAAATTGCAAGGCTTCACGAGAAGATTTTAGATGCCAGAAAAGACTTCTTACATAAATTGT
CTTCACAGATTATAAACGAAAACCAAGTTATAGTCAGTGAAGACTTAAATGTAAGTGGTATGACTAAGAATTCTAAACTA
GCCAAATCAATATCAGATGCATCTTGGTCAGAATTTGTCAGACAACTAGAATATAAAGCTAACTGGTATTCTAGAACTTA
CATTAAAATAGGTAGGTTTTTCCCATCAAGTCAACTATGTTCTAGTTGTAGAGTAAAAAACACAGAAGTTAAATATCTTT
TAATTAGAGAATGGGCTTGTGATAACTGTGGAACCCATCATGATAGGGACGTAAATTCTAGTAAAAATATTCTTCAAGAA
GGACTTAGAAAGTTAGCCTAA

Upstream 100 bases:

>100_bases
ACAGAAAGAACAATTAGCAAAAGCTTTTGGGTGTGTTAGATTTGTCTATAACTACTATTTAGCCAAGAAAATAAAACTGT
ATGAAGATAGGCAAGAATCT

Downstream 100 bases:

>100_bases
CAATAAATGTAGGGTAGGAACTATCCGAATTAACGCCTGTGGAGAATACGGTGCAACAAGGCCGGTCTGAGAAGCAGGAA
ATTCTAGTAGCGATACTAGA

Product: transposase, IS605 OrfB family

Products: NA

Alternate protein names: ORF401 [H]

Number of amino acids: Translated: 326; Mature: 325

Protein sequence:

>326_residues
MSKIDCNNHLNRELKKELVWLKEVDKFALTNSIYNLDTAFQNFFRRVKQGNKQAGFPKFKSKHINKFSYTTNFTNNNIEV
NFSEKRIKLPKLKWVEAKVHREFDGKIKSATISKNPSGRYFVSILVDTEIAELPRVNKNIGFDLGISDFLIDSDGNKISN
PKNLSKYERKLAKLQIQLSKKQKGSNNRNKMRIKIARLHEKILDARKDFLHKLSSQIINENQVIVSEDLNVSGMTKNSKL
AKSISDASWSEFVRQLEYKANWYSRTYIKIGRFFPSSQLCSSCRVKNTEVKYLLIREWACDNCGTHHDRDVNSSKNILQE
GLRKLA

Sequences:

>Translated_326_residues
MSKIDCNNHLNRELKKELVWLKEVDKFALTNSIYNLDTAFQNFFRRVKQGNKQAGFPKFKSKHINKFSYTTNFTNNNIEV
NFSEKRIKLPKLKWVEAKVHREFDGKIKSATISKNPSGRYFVSILVDTEIAELPRVNKNIGFDLGISDFLIDSDGNKISN
PKNLSKYERKLAKLQIQLSKKQKGSNNRNKMRIKIARLHEKILDARKDFLHKLSSQIINENQVIVSEDLNVSGMTKNSKL
AKSISDASWSEFVRQLEYKANWYSRTYIKIGRFFPSSQLCSSCRVKNTEVKYLLIREWACDNCGTHHDRDVNSSKNILQE
GLRKLA
>Mature_325_residues
SKIDCNNHLNRELKKELVWLKEVDKFALTNSIYNLDTAFQNFFRRVKQGNKQAGFPKFKSKHINKFSYTTNFTNNNIEVN
FSEKRIKLPKLKWVEAKVHREFDGKIKSATISKNPSGRYFVSILVDTEIAELPRVNKNIGFDLGISDFLIDSDGNKISNP
KNLSKYERKLAKLQIQLSKKQKGSNNRNKMRIKIARLHEKILDARKDFLHKLSSQIINENQVIVSEDLNVSGMTKNSKLA
KSISDASWSEFVRQLEYKANWYSRTYIKIGRFFPSSQLCSSCRVKNTEVKYLLIREWACDNCGTHHDRDVNSSKNILQEG
LRKLA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=327, Percent_Identity=33.3333333333333, Blast_Score=164, Evalue=9e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 37860; Mature: 37729

Theoretical pI: Translated: 10.54; Mature: 10.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKIDCNNHLNRELKKELVWLKEVDKFALTNSIYNLDTAFQNFFRRVKQGNKQAGFPKFK
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH
SKHINKFSYTTNFTNNNIEVNFSEKRIKLPKLKWVEAKVHREFDGKIKSATISKNPSGRY
HHCCCEEEEEECCCCCEEEEEECCCEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCE
FVSILVDTEIAELPRVNKNIGFDLGISDFLIDSDGNKISNPKNLSKYERKLAKLQIQLSK
EEEEEEECHHHHCCCCCCCCCCCCCCHHEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHH
KQKGSNNRNKMRIKIARLHEKILDARKDFLHKLSSQIINENQVIVSEDLNVSGMTKNSKL
HCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCHHH
AKSISDASWSEFVRQLEYKANWYSRTYIKIGRFFPSSQLCSSCRVKNTEVKYLLIREWAC
HHHHCCCHHHHHHHHHHHHCCCCEEHEEEEECCCCCHHHHHHCCCCCCCEEEEEEEECCC
DNCGTHHDRDVNSSKNILQEGLRKLA
CCCCCCCCCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure 
SKIDCNNHLNRELKKELVWLKEVDKFALTNSIYNLDTAFQNFFRRVKQGNKQAGFPKFK
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH
SKHINKFSYTTNFTNNNIEVNFSEKRIKLPKLKWVEAKVHREFDGKIKSATISKNPSGRY
HHCCCEEEEEECCCCCEEEEEECCCEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCE
FVSILVDTEIAELPRVNKNIGFDLGISDFLIDSDGNKISNPKNLSKYERKLAKLQIQLSK
EEEEEEECHHHHCCCCCCCCCCCCCCHHEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHH
KQKGSNNRNKMRIKIARLHEKILDARKDFLHKLSSQIINENQVIVSEDLNVSGMTKNSKL
HCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCHHH
AKSISDASWSEFVRQLEYKANWYSRTYIKIGRFFPSSQLCSSCRVKNTEVKYLLIREWAC
HHHHCCCHHHHHHHHHHHHCCCCEEHEEEEECCCCCHHHHHHCCCCCCCEEEEEEEECCC
DNCGTHHDRDVNSSKNILQEGLRKLA
CCCCCCCCCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7665509 [H]