Click here to switch to the map view.

The map label for this gene is yrxA [H]

Identifier: 188587020

GI number: 188587020

Start: 2585048

End: 2585572

Strand: Direct

Name: yrxA [H]

Synonym: Nther_2412

Alternate gene names: 188587020

Gene position: 2585048-2585572 (Clockwise)

Preceding gene: 188587017

Following gene: 188587021

Centisome position: 81.66

GC content: 40.95

Gene sequence:

>525_bases
ATGGATGCAGAACAAAGAAGGAAACAAATCCTAAACCTGCTGTCTGCAGAAACTCCAGTGACAGGGAGCCAATTGGGTGA
AAAGTTTGATGTCAGTAGACAAGTGATAGTTCAGGATATTGCTTTGTTAAGGGCCCAGGGATATCAAATCATGGCAACTC
CCCAGGGATATATCAATCAATCTGAAAAGGATTCCCAAAATAGCCATATCATAACAATCGCCAGCAAACACGAACGAGAG
GATATTAAGGAGGAATTAGAAACCATAGTTGATTTGGGAGGAACAATTTTAGATGTCATGGTGGAACATCCTATCTATGG
TGAGCTTAAGGGACAACTAATGGTGAAATCCCGTAGAGATGTGCAAATGTTTTTAGATAAACTAGAAAATACCCAGGCAA
ATCCGCTGGCTACCCTAACCCAGGGTGTTCATTTGCATACTATAGAAGTCCCCAGTCAAGAAGCGGCTCAGGAAATCAAA
ACAGTCTTAAAGGAAAGAAATTTTCTAGTCAAAGAAGATGGCTAG

Upstream 100 bases:

>100_bases
GTTGACCTGATTCAAAAAATCTGTTAATTTTAATACAGATGTCAAGACAGGTGTAAATCCAAAGATAGGTGTAAATTTAA
AAGTTAGGAAGGGATGGACA

Downstream 100 bases:

>100_bases
CTCTGTAGCTGAATGCAGTTGAACAATCAAGTCAGAGCGCCCTGTTCAGGAGCTTGCTCCTTTTTTTAAGATGAAGTGTA
AAGACAGGTGTAAATCATTT

Product: 3H domain protein

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 174; Mature: 174

Protein sequence:

>174_residues
MDAEQRRKQILNLLSAETPVTGSQLGEKFDVSRQVIVQDIALLRAQGYQIMATPQGYINQSEKDSQNSHIITIASKHERE
DIKEELETIVDLGGTILDVMVEHPIYGELKGQLMVKSRRDVQMFLDKLENTQANPLATLTQGVHLHTIEVPSQEAAQEIK
TVLKERNFLVKEDG

Sequences:

>Translated_174_residues
MDAEQRRKQILNLLSAETPVTGSQLGEKFDVSRQVIVQDIALLRAQGYQIMATPQGYINQSEKDSQNSHIITIASKHERE
DIKEELETIVDLGGTILDVMVEHPIYGELKGQLMVKSRRDVQMFLDKLENTQANPLATLTQGVHLHTIEVPSQEAAQEIK
TVLKERNFLVKEDG
>Mature_174_residues
MDAEQRRKQILNLLSAETPVTGSQLGEKFDVSRQVIVQDIALLRAQGYQIMATPQGYINQSEKDSQNSHIITIASKHERE
DIKEELETIVDLGGTILDVMVEHPIYGELKGQLMVKSRRDVQMFLDKLENTQANPLATLTQGVHLHTIEVPSQEAAQEIK
TVLKERNFLVKEDG

Specific function: Unknown

COG id: COG1827

COG function: function code R; Predicted small molecule binding protein (contains 3H domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004173
- InterPro:   IPR013196
- InterPro:   IPR011991
- ProDom:   PD469575 [H]

Pfam domain/function: PF02829 3H; PF08279 HTH_11 [H]

EC number: NA

Molecular weight: Translated: 19604; Mature: 19604

Theoretical pI: Translated: 4.92; Mature: 4.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDAEQRRKQILNLLSAETPVTGSQLGEKFDVSRQVIVQDIALLRAQGYQIMATPQGYINQ
CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHCCC
SEKDSQNSHIITIASKHEREDIKEELETIVDLGGTILDVMVEHPIYGELKGQLMVKSRRD
CCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCEEECCHHH
VQMFLDKLENTQANPLATLTQGVHLHTIEVPSQEAAQEIKTVLKERNFLVKEDG
HHHHHHHHHCCCCCCHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCEEECCC
>Mature Secondary Structure
MDAEQRRKQILNLLSAETPVTGSQLGEKFDVSRQVIVQDIALLRAQGYQIMATPQGYINQ
CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHCCC
SEKDSQNSHIITIASKHEREDIKEELETIVDLGGTILDVMVEHPIYGELKGQLMVKSRRD
CCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCEEECCHHH
VQMFLDKLENTQANPLATLTQGVHLHTIEVPSQEAAQEIKTVLKERNFLVKEDG
HHHHHHHHHCCCCCCHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8444804; 9384377 [H]