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The map label for this gene is lytR [H]

Identifier: 188586985

GI number: 188586985

Start: 2538314

End: 2539348

Strand: Reverse

Name: lytR [H]

Synonym: Nther_2377

Alternate gene names: 188586985

Gene position: 2539348-2538314 (Counterclockwise)

Preceding gene: 188586986

Following gene: 188586984

Centisome position: 80.22

GC content: 40.19

Gene sequence:

>1035_bases
ATGAGCTTTTTTAAAAAAATAAAATTGCCTGGCTTAATTCTGCTGATCGTTATTTTACTTGCATCAGCATATGCTGGTTA
TCGTGTGGCTGACTTGTATTACGGAATTTACAATCCAGACCCCGAGAGTGCGGATAATGAGAACAATGGAAATGAAATAC
CTGTACCTCCAGAAGAAGAAAATATCTTGAATGTATTATTAATCGGTGCTGATGGGGAAAATGGCCGTGGTCGGGCCGAT
ACTATCATGCTGGCTCGATATGATAAAGAAACCAAGGATGTGGGACTAATTTCCATTCCCAGAGATAGCAAAGTAGAGCT
GCCTGGCAGAGGTGAAGAAAAAATCAATCATGCCTTTGCTTATGGTGGACACGAGTATTTGATTGATACTGTGGAAAAGT
TTTTAGATATTCCCATCCACAATTATGTGACTGTAAATATGAGAGGTTTTAAAAATACCATTGATATACTGGGCGGAGTG
GAAATTCATGTAGAACAAGATATGTACCATGAAACATGGAAAGATGGAGAACTAGTCCCTATTATAAACCTGCAGGCAGG
AACCCAGATTTTAGACGGCGAAGAAGCCCTGCAATATGTGCGCTGGCGCGGTGATGCCGATGCCGACTTGGGAAGAGTGG
AAAGGCAACAGAAATTAGTGAAAGAAGTTATTGATGAGTTGTTGCAGTTCAGCTCTGTGACCAAGATTAACCAGCTACTA
GAGCAAGCCAGTGATAATGTAGAGACGAACTTTAGACTTTCAGAGCTAATGAATCATGCTGTTTCGTTTCATAATATAAA
CTGGGACGATATGGAAACAGCCACATTACCTGGTGAAAGTCAAAAAACTAGTGCTTGGTATTATATGGTTGATAAAGAGG
AATGTCGCCAAGCCGTTAAAGATATCATTAAGGACGATGAAGAACAGGAAGATATGGAACAGGAAAATACGGAGCAGGAA
GATACAGATAAGGAAGATACTGAACAAGAAGGCTCAGCTGAAGGTAAACAAAAGCTAGATAAGTTAAGAGCCTAA

Upstream 100 bases:

>100_bases
AATACGTAATCTTGTGATGGTAACTATTTACAGAGTGACACAAAGGAAGGATATCGGTCATTAAAAGCGAATTTGTAAGT
TAGTTTAGGAGTGTCTATAT

Downstream 100 bases:

>100_bases
AAATGGCAGAGATAATGCAATAGAAACATCAAAGAAAGGTTTAGAACTGGAGGTTATGACCTATGGAGCTCTACCTTAAA
GTTGCGGTAACTTCTGCCGC

Product: cell envelope-related transcriptional attenuator

Products: NA

Alternate protein names: Membrane-bound protein lytR [H]

Number of amino acids: Translated: 344; Mature: 343

Protein sequence:

>344_residues
MSFFKKIKLPGLILLIVILLASAYAGYRVADLYYGIYNPDPESADNENNGNEIPVPPEEENILNVLLIGADGENGRGRAD
TIMLARYDKETKDVGLISIPRDSKVELPGRGEEKINHAFAYGGHEYLIDTVEKFLDIPIHNYVTVNMRGFKNTIDILGGV
EIHVEQDMYHETWKDGELVPIINLQAGTQILDGEEALQYVRWRGDADADLGRVERQQKLVKEVIDELLQFSSVTKINQLL
EQASDNVETNFRLSELMNHAVSFHNINWDDMETATLPGESQKTSAWYYMVDKEECRQAVKDIIKDDEEQEDMEQENTEQE
DTDKEDTEQEGSAEGKQKLDKLRA

Sequences:

>Translated_344_residues
MSFFKKIKLPGLILLIVILLASAYAGYRVADLYYGIYNPDPESADNENNGNEIPVPPEEENILNVLLIGADGENGRGRAD
TIMLARYDKETKDVGLISIPRDSKVELPGRGEEKINHAFAYGGHEYLIDTVEKFLDIPIHNYVTVNMRGFKNTIDILGGV
EIHVEQDMYHETWKDGELVPIINLQAGTQILDGEEALQYVRWRGDADADLGRVERQQKLVKEVIDELLQFSSVTKINQLL
EQASDNVETNFRLSELMNHAVSFHNINWDDMETATLPGESQKTSAWYYMVDKEECRQAVKDIIKDDEEQEDMEQENTEQE
DTDKEDTEQEGSAEGKQKLDKLRA
>Mature_343_residues
SFFKKIKLPGLILLIVILLASAYAGYRVADLYYGIYNPDPESADNENNGNEIPVPPEEENILNVLLIGADGENGRGRADT
IMLARYDKETKDVGLISIPRDSKVELPGRGEEKINHAFAYGGHEYLIDTVEKFLDIPIHNYVTVNMRGFKNTIDILGGVE
IHVEQDMYHETWKDGELVPIINLQAGTQILDGEEALQYVRWRGDADADLGRVERQQKLVKEVIDELLQFSSVTKINQLLE
QASDNVETNFRLSELMNHAVSFHNINWDDMETATLPGESQKTSAWYYMVDKEECRQAVKDIIKDDEEQEDMEQENTEQED
TDKEDTEQEGSAEGKQKLDKLRA

Specific function: Attenuator role for operon expression [H]

COG id: COG1316

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the LytR/CpsA/Psr regulatory protein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004474 [H]

Pfam domain/function: PF03816 LytR_cpsA_psr [H]

EC number: NA

Molecular weight: Translated: 39113; Mature: 38982

Theoretical pI: Translated: 4.20; Mature: 4.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFFKKIKLPGLILLIVILLASAYAGYRVADLYYGIYNPDPESADNENNGNEIPVPPEEE
CCHHHHHCCCHHHHHHHHHHHHHHCCCEEEHHEEECCCCCCCCCCCCCCCCCCCCCCCCC
NILNVLLIGADGENGRGRADTIMLARYDKETKDVGLISIPRDSKVELPGRGEEKINHAFA
CEEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCEEECCCCCCEECCCCCHHHHHHHHH
YGGHEYLIDTVEKFLDIPIHNYVTVNMRGFKNTIDILGGVEIHVEQDMYHETWKDGELVP
CCCHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHCCEEEEECHHHHHHHCCCCCEEE
IINLQAGTQILDGEEALQYVRWRGDADADLGRVERQQKLVKEVIDELLQFSSVTKINQLL
EEECCCCCEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EQASDNVETNFRLSELMNHAVSFHNINWDDMETATLPGESQKTSAWYYMVDKEECRQAVK
HHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECHHHHHHHHH
DIIKDDEEQEDMEQENTEQEDTDKEDTEQEGSAEGKQKLDKLRA
HHHCCCCHHHHHHHHCCCCCCCCCHHHHHHCCHHHHHHHHHHCC
>Mature Secondary Structure 
SFFKKIKLPGLILLIVILLASAYAGYRVADLYYGIYNPDPESADNENNGNEIPVPPEEE
CHHHHHCCCHHHHHHHHHHHHHHCCCEEEHHEEECCCCCCCCCCCCCCCCCCCCCCCCC
NILNVLLIGADGENGRGRADTIMLARYDKETKDVGLISIPRDSKVELPGRGEEKINHAFA
CEEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCEEECCCCCCEECCCCCHHHHHHHHH
YGGHEYLIDTVEKFLDIPIHNYVTVNMRGFKNTIDILGGVEIHVEQDMYHETWKDGELVP
CCCHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHCCEEEEECHHHHHHHCCCCCEEE
IINLQAGTQILDGEEALQYVRWRGDADADLGRVERQQKLVKEVIDELLQFSSVTKINQLL
EEECCCCCEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EQASDNVETNFRLSELMNHAVSFHNINWDDMETATLPGESQKTSAWYYMVDKEECRQAVK
HHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECHHHHHHHHH
DIIKDDEEQEDMEQENTEQEDTDKEDTEQEGSAEGKQKLDKLRA
HHHCCCCHHHHHHHHCCCCCCCCCHHHHHHCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12235376 [H]