Click here to switch to the map view.

The map label for this gene is yerB [H]

Identifier: 188586954

GI number: 188586954

Start: 2496036

End: 2497229

Strand: Reverse

Name: yerB [H]

Synonym: Nther_2346

Alternate gene names: 188586954

Gene position: 2497229-2496036 (Counterclockwise)

Preceding gene: 188586955

Following gene: 188586952

Centisome position: 78.89

GC content: 43.13

Gene sequence:

>1194_bases
ATGGCACGAAATTACAAAAGGAAAAAGAAAAAACTCAAACTCAAAAAGCTCCCCCTGGCGATTACGTCGCTGATTTTAGT
CCTGCTGGTTACCGGCGGTTTATATGCCATATTAAGTGACGATGAGGCTGCAGAACCATCTATTCCGGAAAAAGAAGAAG
AAAAGGAAAAGGAAGAGCCTGACCCTGAGTTGGAACTTGTAGAAGTTCCTCGTTGTGAATACTGTGGAGGAGAAATGGAA
GACGAAGAAAAGGAGCTGTCACGACCGGTGACAGTAACCTATGGAAACACTGCCAATGAGCGACCCCAGTCCGGGATAAA
TTCTGCTTGTATAATGTATGAAGCTCCGGCAGAAGGTAGTCTAACTAGGCTTCAGGCTGTATTCAAACATCAGCACTCGG
AAAAAATAGGCCCGATTCGCTCGGCTAGGTACTATCTCGTCACTTTGGCTCTAGAACATGATGCTTTGTACGCCCATATC
CAGGGCTATCAGCCGGTGATGAACAAAATCAGGGACAAAAATGTTGCTACTCTAAATGAATATGGTGATGCGAGTTATTT
TTGGCGCTCAGAGGATCGCCGGGCTCCTTTTAATGCTTATACAAATATAGAAAATTTATTGGAAGCGGCCGAATCTAGAG
GATACCGCCCTGAGGGCCAGCGGGACAATTTTATTACATACAACGAAGAGTTTTCCAAAGAATTTATAAATCATGCTATA
GCAGTTACAGAAAAGGATGACGAAAAGGACCATACCGATATAAAAACCAGTTTTATAGCTACTGAAGCGGGTCAAGCAGA
GGTGGAATCTGCAGAAGAAATAACAATCAATTACGGTAGGGGTAATCTTGTGGAATATCAGTATAACGAAGAAGATCGAA
ATTATCAGCGGTATATCAATGAAGACCCCCATGTTGACCAGGCAGATGAAGAGCAAATTACTGCTCAGGATCTGATAATC
CAATATGTGGATTCTAGAGTAATAGACGATCAAGGAAGACGCAGGCTAGGAATGATAGGAGAAGGAGAGGCCAAATATCT
AGCAGATGGTAAAGTTGTGCCCTTGACTTGGGAAAAGGATGACCACGACGAACCCACCGAATTTTATCACGCGGAAACGG
AAGAACCTCTGGAATTACGTCCTGGTTTAACCTGGATAAATATTGTACCCTACGGGACAGAAATTAGTTATTAG

Upstream 100 bases:

>100_bases
GTTACTAAAAGTTATTTAAAGTTACTTAATGTGTGAGTTCCTTGTTAGTTTCTTATAGGGAATTTTCGTACCAGGCTAGT
CACGTGGAAGGTGGTAAAAA

Downstream 100 bases:

>100_bases
TAATGGCTGTGTATTATGCAAAACAGCAGCAGAAAGCCCACTGTTTGACTGTGGGAATATATCAAAGTTAAATGCTTATA
ACTGTTATAAAAAAAGCCCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 397; Mature: 396

Protein sequence:

>397_residues
MARNYKRKKKKLKLKKLPLAITSLILVLLVTGGLYAILSDDEAAEPSIPEKEEEKEKEEPDPELELVEVPRCEYCGGEME
DEEKELSRPVTVTYGNTANERPQSGINSACIMYEAPAEGSLTRLQAVFKHQHSEKIGPIRSARYYLVTLALEHDALYAHI
QGYQPVMNKIRDKNVATLNEYGDASYFWRSEDRRAPFNAYTNIENLLEAAESRGYRPEGQRDNFITYNEEFSKEFINHAI
AVTEKDDEKDHTDIKTSFIATEAGQAEVESAEEITINYGRGNLVEYQYNEEDRNYQRYINEDPHVDQADEEQITAQDLII
QYVDSRVIDDQGRRRLGMIGEGEAKYLADGKVVPLTWEKDDHDEPTEFYHAETEEPLELRPGLTWINIVPYGTEISY

Sequences:

>Translated_397_residues
MARNYKRKKKKLKLKKLPLAITSLILVLLVTGGLYAILSDDEAAEPSIPEKEEEKEKEEPDPELELVEVPRCEYCGGEME
DEEKELSRPVTVTYGNTANERPQSGINSACIMYEAPAEGSLTRLQAVFKHQHSEKIGPIRSARYYLVTLALEHDALYAHI
QGYQPVMNKIRDKNVATLNEYGDASYFWRSEDRRAPFNAYTNIENLLEAAESRGYRPEGQRDNFITYNEEFSKEFINHAI
AVTEKDDEKDHTDIKTSFIATEAGQAEVESAEEITINYGRGNLVEYQYNEEDRNYQRYINEDPHVDQADEEQITAQDLII
QYVDSRVIDDQGRRRLGMIGEGEAKYLADGKVVPLTWEKDDHDEPTEFYHAETEEPLELRPGLTWINIVPYGTEISY
>Mature_396_residues
ARNYKRKKKKLKLKKLPLAITSLILVLLVTGGLYAILSDDEAAEPSIPEKEEEKEKEEPDPELELVEVPRCEYCGGEMED
EEKELSRPVTVTYGNTANERPQSGINSACIMYEAPAEGSLTRLQAVFKHQHSEKIGPIRSARYYLVTLALEHDALYAHIQ
GYQPVMNKIRDKNVATLNEYGDASYFWRSEDRRAPFNAYTNIENLLEAAESRGYRPEGQRDNFITYNEEFSKEFINHAIA
VTEKDDEKDHTDIKTSFIATEAGQAEVESAEEITINYGRGNLVEYQYNEEDRNYQRYINEDPHVDQADEEQITAQDLIIQ
YVDSRVIDDQGRRRLGMIGEGEAKYLADGKVVPLTWEKDDHDEPTEFYHAETEEPLELRPGLTWINIVPYGTEISY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR021416
- InterPro:   IPR023158 [H]

Pfam domain/function: PF11258 DUF3048 [H]

EC number: NA

Molecular weight: Translated: 45592; Mature: 45461

Theoretical pI: Translated: 4.39; Mature: 4.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARNYKRKKKKLKLKKLPLAITSLILVLLVTGGLYAILSDDEAAEPSIPEKEEEKEKEEP
CCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCHHHHHHHCCC
DPELELVEVPRCEYCGGEMEDEEKELSRPVTVTYGNTANERPQSGINSACIMYEAPAEGS
CCCEEEEECCCHHHCCCCCCCHHHHHCCCEEEEECCCCCCCCCCCCCCEEEEEECCCCCH
LTRLQAVFKHQHSEKIGPIRSARYYLVTLALEHDALYAHIQGYQPVMNKIRDKNVATLNE
HHHHHHHHHHHHHHHCCCHHCCEEEEEEEEEECCEEEEEECCCHHHHHHHCCCCCEEHHC
YGDASYFWRSEDRRAPFNAYTNIENLLEAAESRGYRPEGQRDNFITYNEEFSKEFINHAI
CCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECHHHHHHHHHHEE
AVTEKDDEKDHTDIKTSFIATEAGQAEVESAEEITINYGRGNLVEYQYNEEDRNYQRYIN
EEECCCCCCCCCHHHHHEEEECCCCHHHCCCCEEEEECCCCCEEEEEECCCCCHHHHHCC
EDPHVDQADEEQITAQDLIIQYVDSRVIDDQGRRRLGMIGEGEAKYLADGKVVPLTWEKD
CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCEEEECCEEEEEEECCC
DHDEPTEFYHAETEEPLELRPGLTWINIVPYGTEISY
CCCCCHHHEECCCCCCCEECCCCEEEEEEECCCCCCC
>Mature Secondary Structure 
ARNYKRKKKKLKLKKLPLAITSLILVLLVTGGLYAILSDDEAAEPSIPEKEEEKEKEEP
CCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCHHHHHHHCCC
DPELELVEVPRCEYCGGEMEDEEKELSRPVTVTYGNTANERPQSGINSACIMYEAPAEGS
CCCEEEEECCCHHHCCCCCCCHHHHHCCCEEEEECCCCCCCCCCCCCCEEEEEECCCCCH
LTRLQAVFKHQHSEKIGPIRSARYYLVTLALEHDALYAHIQGYQPVMNKIRDKNVATLNE
HHHHHHHHHHHHHHHCCCHHCCEEEEEEEEEECCEEEEEECCCHHHHHHHCCCCCEEHHC
YGDASYFWRSEDRRAPFNAYTNIENLLEAAESRGYRPEGQRDNFITYNEEFSKEFINHAI
CCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECHHHHHHHHHHEE
AVTEKDDEKDHTDIKTSFIATEAGQAEVESAEEITINYGRGNLVEYQYNEEDRNYQRYIN
EEECCCCCCCCCHHHHHEEEECCCCHHHCCCCEEEEECCCCCEEEEEECCCCCHHHHHCC
EDPHVDQADEEQITAQDLIIQYVDSRVIDDQGRRRLGMIGEGEAKYLADGKVVPLTWEKD
CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCEEEECCEEEEEEECCC
DHDEPTEFYHAETEEPLELRPGLTWINIVPYGTEISY
CCCCCHHHEECCCCCCCEECCCCEEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969499; 9701819; 9384377 [H]