Click here to switch to the map view.

The map label for this gene is tra905 [H]

Identifier: 188586944

GI number: 188586944

Start: 2483521

End: 2484693

Strand: Reverse

Name: tra905 [H]

Synonym: Nther_2336

Alternate gene names: 188586944

Gene position: 2484693-2483521 (Counterclockwise)

Preceding gene: 188586946

Following gene: 188586943

Centisome position: 78.49

GC content: 38.7

Gene sequence:

>1173_bases
TTGAGTAGTGTACCAAATTCCGAGCAAAAAAATCAACTAGAAGAAATCATGAAAAGTTTTGTTCAGGAATTTCTTCAAGA
AAAAATTGAACTCATCATGCGTGAAGAAATTAGAAACTTTTTAAAAGAGCAAGACGAAAAGAATTATCGAAACGGCTATT
ACACACGTTCTCTAGACACCTTGTTTGGCCAAATCGAAGATCTTAATGTACCAAGGGATCGAAATGGTGATTTTCAAACC
CAGCTAATAGAACCGTATCAAAAGCGTGATTGCTGGCTTGAAGAAGCTATCATCAGGATGTACCAAAAAGGTATGAGCAC
TCGTGATGTAGCAAAGTTCATTGAGACCCTTTTAGGCGATTCTTATTCGCCTAGTACGGTAAGTAATATTACTGAAGTAG
CTTTAGAAGATATTCAAGAGTTTCAAAACAGGCCACTCAAAAAGCGTTATAGTGTTCTCTACCTGGATGGCATGAACATC
AAGCTGCGGCGTGATTCAGTAGAAAATGAGTCTGTTTACATAGCTTGTGGTGTCGATGAAGAGGGGTACAGGGAAATACT
AGGTTTCTACGTTGGTGGTAGAGAAAACGCCTTGGGTTGGCAAGAACTATTAAATGACCTGCACTCTCGTGGTGTACAGG
AAGTATTGCTAGGTGTGTTTGACGGACTTCCTGGTTTGGCTGATGCTTTCAAGAAGGTGTTTCCTAAAGCTGATGTCCAG
CAGTGCGTCATTCACCAGGTTAGAAATACTTTGAATGCCGTAAGAAAAAAAGACCAGTATGAAGTTGCTGAAGACCTAAA
GCCTATATATAAGTCTTTTTCTAAAGAAGAGGCTCACCACCATTTCGAAAAATTTAAAGAAAAATGGGGTTCAAGGTATC
CCCGTGTTGTAGATTCCTGGGAAAAGAATTTGCCTAATTTATTAACTTTCTTGGATTATCCATCTGATATTCGAGCTGTT
ATCTACACTACAAACTGGATCGAGAGAACTATTAAGGAAATTAGAAAACGTCTAAAGACTATGAACAGTTTAACTAGCCC
AAAGGCTGCCGAAAAAGTGATCTTCTTTGCTATTCAGGACATCAATGTTCGATGGGCTAATAAAAAACTTCGTGGTTTCA
AACAATGCCAGCACAAGCTACAAGAAATGTTTGAGCTAAGATACGACTGTTAA

Upstream 100 bases:

>100_bases
TTTGTGTAAAGGTTGACTAAAACAAAAAAAGTAGGGTATCCTCGGAATTTGGAGAAAAAACCCAAGCCGTTTTTACGGCT
AGAAAGGAGGATACCCTACG

Downstream 100 bases:

>100_bases
GACTTTTCCGAGGGCCCTACGCCCTTTACACAAAATTCTTGACACTACCCAACTTTTACAGCAAGATCATATCAAAAACC
ATATTCAACCACATATCACG

Product: transposase mutator type

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 390; Mature: 389

Protein sequence:

>390_residues
MSSVPNSEQKNQLEEIMKSFVQEFLQEKIELIMREEIRNFLKEQDEKNYRNGYYTRSLDTLFGQIEDLNVPRDRNGDFQT
QLIEPYQKRDCWLEEAIIRMYQKGMSTRDVAKFIETLLGDSYSPSTVSNITEVALEDIQEFQNRPLKKRYSVLYLDGMNI
KLRRDSVENESVYIACGVDEEGYREILGFYVGGRENALGWQELLNDLHSRGVQEVLLGVFDGLPGLADAFKKVFPKADVQ
QCVIHQVRNTLNAVRKKDQYEVAEDLKPIYKSFSKEEAHHHFEKFKEKWGSRYPRVVDSWEKNLPNLLTFLDYPSDIRAV
IYTTNWIERTIKEIRKRLKTMNSLTSPKAAEKVIFFAIQDINVRWANKKLRGFKQCQHKLQEMFELRYDC

Sequences:

>Translated_390_residues
MSSVPNSEQKNQLEEIMKSFVQEFLQEKIELIMREEIRNFLKEQDEKNYRNGYYTRSLDTLFGQIEDLNVPRDRNGDFQT
QLIEPYQKRDCWLEEAIIRMYQKGMSTRDVAKFIETLLGDSYSPSTVSNITEVALEDIQEFQNRPLKKRYSVLYLDGMNI
KLRRDSVENESVYIACGVDEEGYREILGFYVGGRENALGWQELLNDLHSRGVQEVLLGVFDGLPGLADAFKKVFPKADVQ
QCVIHQVRNTLNAVRKKDQYEVAEDLKPIYKSFSKEEAHHHFEKFKEKWGSRYPRVVDSWEKNLPNLLTFLDYPSDIRAV
IYTTNWIERTIKEIRKRLKTMNSLTSPKAAEKVIFFAIQDINVRWANKKLRGFKQCQHKLQEMFELRYDC
>Mature_389_residues
SSVPNSEQKNQLEEIMKSFVQEFLQEKIELIMREEIRNFLKEQDEKNYRNGYYTRSLDTLFGQIEDLNVPRDRNGDFQTQ
LIEPYQKRDCWLEEAIIRMYQKGMSTRDVAKFIETLLGDSYSPSTVSNITEVALEDIQEFQNRPLKKRYSVLYLDGMNIK
LRRDSVENESVYIACGVDEEGYREILGFYVGGRENALGWQELLNDLHSRGVQEVLLGVFDGLPGLADAFKKVFPKADVQQ
CVIHQVRNTLNAVRKKDQYEVAEDLKPIYKSFSKEEAHHHFEKFKEKWGSRYPRVVDSWEKNLPNLLTFLDYPSDIRAVI
YTTNWIERTIKEIRKRLKTMNSLTSPKAAEKVIFFAIQDINVRWANKKLRGFKQCQHKLQEMFELRYDC

Specific function: Required for the transposition of the insertion element [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transposase mutator family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001207 [H]

Pfam domain/function: PF00872 Transposase_mut [H]

EC number: NA

Molecular weight: Translated: 46023; Mature: 45892

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: PS01007 TRANSPOSASE_MUTATOR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSVPNSEQKNQLEEIMKSFVQEFLQEKIELIMREEIRNFLKEQDEKNYRNGYYTRSLDT
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
LFGQIEDLNVPRDRNGDFQTQLIEPYQKRDCWLEEAIIRMYQKGMSTRDVAKFIETLLGD
HHHHHHHCCCCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC
SYSPSTVSNITEVALEDIQEFQNRPLKKRYSVLYLDGMNIKLRRDSVENESVYIACGVDE
CCCCHHHHHHHHHHHHHHHHHHCCCHHHHCCEEEEECCEEEEECCCCCCCCEEEEECCCC
EGYREILGFYVGGRENALGWQELLNDLHSRGVQEVLLGVFDGLPGLADAFKKVFPKADVQ
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHCCCHHHHHHHHHCCCCHHH
QCVIHQVRNTLNAVRKKDQYEVAEDLKPIYKSFSKEEAHHHFEKFKEKWGSRYPRVVDSW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
EKNLPNLLTFLDYPSDIRAVIYTTNWIERTIKEIRKRLKTMNSLTSPKAAEKVIFFAIQD
HHCHHHHHHHHCCCCHHHEEEEEHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHEEEC
INVRWANKKLRGFKQCQHKLQEMFELRYDC
CCEEEHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SSVPNSEQKNQLEEIMKSFVQEFLQEKIELIMREEIRNFLKEQDEKNYRNGYYTRSLDT
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
LFGQIEDLNVPRDRNGDFQTQLIEPYQKRDCWLEEAIIRMYQKGMSTRDVAKFIETLLGD
HHHHHHHCCCCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC
SYSPSTVSNITEVALEDIQEFQNRPLKKRYSVLYLDGMNIKLRRDSVENESVYIACGVDE
CCCCHHHHHHHHHHHHHHHHHHCCCHHHHCCEEEEECCEEEEECCCCCCCCEEEEECCCC
EGYREILGFYVGGRENALGWQELLNDLHSRGVQEVLLGVFDGLPGLADAFKKVFPKADVQ
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHCCCHHHHHHHHHCCCCHHH
QCVIHQVRNTLNAVRKKDQYEVAEDLKPIYKSFSKEEAHHHFEKFKEKWGSRYPRVVDSW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
EKNLPNLLTFLDYPSDIRAVIYTTNWIERTIKEIRKRLKTMNSLTSPKAAEKVIFFAIQD
HHCHHHHHHHHCCCCHHHEEEEEHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHEEEC
INVRWANKKLRGFKQCQHKLQEMFELRYDC
CCEEEHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8195098; 11337471 [H]