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The map label for this gene is yjbJ [H]

Identifier: 188586905

GI number: 188586905

Start: 2441514

End: 2442329

Strand: Reverse

Name: yjbJ [H]

Synonym: Nther_2296

Alternate gene names: 188586905

Gene position: 2442329-2441514 (Counterclockwise)

Preceding gene: 188586906

Following gene: 188586904

Centisome position: 77.15

GC content: 41.18

Gene sequence:

>816_bases
ATGTTAAGTACGGCAACGTTAGATATGGTCTATTTGGTGGTGATTTTTGGCCTAATATTATGTTTAGTATATGTTGTTAT
GCATGATGAAGAGTTATCCTTAGTGATTAGCTCTAGTCTGGAAGAAAGTGATTTGGATGGCCGCCTGGACCTGTATCGTG
TCAGAAGAATGTTAAATTATCAGTTAAGTGAGGAATACGAACTGACTATTCCAGGTGATACTGAATTTGTAGAAGGTCAG
CCCGAAGCAGGTGCTGTGCAGCTGGCTTCCGCAAATGCAGGTGAATTGGCCAGTGAAACAGAGGAAGATAAAAATATCAG
GATGTTTAAGGGTGAGGATAACTGGTCCTGGGGTAGGGAAGTTACCCCTGAGGACATTACCGATATAACTCCAATGAACA
AAGAGGTAGCAGAAAAGCTTCTCACTCAATCTGAGAACCTGGATCTGGAAATCAGCTTGTTATTAGGGTTGATTGAAGTA
GAAAGTAGATTTGACCCTAAAAACGTAAGTCATGCTGGTGCTGTGGGAATAATGCAAATAATGCCCGGCACTGCCCAGGC
TTTAGCAGATAAGAATGACTTTGGTTACGAATACGAAAAACTTTTTGATCCTTTCTATAACATAAAACTAGGTACTATTC
AGTTGAATTATCTCCTAAACCAGTACGACGGGGATATTCACAAGGCCTTGACTGCATACAATAGAGGGCCTGGTGGTTTG
CAAAGTTATATAGCGCGAACCAATTCTGCACAAAGTGGTTTTTCCAGGTGGGTCCTGGAAGAAGCTGAACGATTTGAAGA
AGAGTTAAATCGATAA

Upstream 100 bases:

>100_bases
TAAAGAAATGATAATTCTGACAAATTGATTAAAAAAACACATAAAAAATTTAATGTAAGTCCAAAGAAGAGTTTCCGAGG
AAGATAAGGGGGGAGAACCT

Downstream 100 bases:

>100_bases
ACATCAAAAAGCTATGCTCAGCACAATGTTGGCACATAGGTGCATAAGGGCCCTGATTAATTTGGGGTCCTTTTTTTATT
ACATTTTGAATTGGAGCTTC

Product: Lytic transglycosylase catalytic

Products: 1,6-Anhydrobond [C]

Alternate protein names: NA

Number of amino acids: Translated: 271; Mature: 271

Protein sequence:

>271_residues
MLSTATLDMVYLVVIFGLILCLVYVVMHDEELSLVISSSLEESDLDGRLDLYRVRRMLNYQLSEEYELTIPGDTEFVEGQ
PEAGAVQLASANAGELASETEEDKNIRMFKGEDNWSWGREVTPEDITDITPMNKEVAEKLLTQSENLDLEISLLLGLIEV
ESRFDPKNVSHAGAVGIMQIMPGTAQALADKNDFGYEYEKLFDPFYNIKLGTIQLNYLLNQYDGDIHKALTAYNRGPGGL
QSYIARTNSAQSGFSRWVLEEAERFEEELNR

Sequences:

>Translated_271_residues
MLSTATLDMVYLVVIFGLILCLVYVVMHDEELSLVISSSLEESDLDGRLDLYRVRRMLNYQLSEEYELTIPGDTEFVEGQ
PEAGAVQLASANAGELASETEEDKNIRMFKGEDNWSWGREVTPEDITDITPMNKEVAEKLLTQSENLDLEISLLLGLIEV
ESRFDPKNVSHAGAVGIMQIMPGTAQALADKNDFGYEYEKLFDPFYNIKLGTIQLNYLLNQYDGDIHKALTAYNRGPGGL
QSYIARTNSAQSGFSRWVLEEAERFEEELNR
>Mature_271_residues
MLSTATLDMVYLVVIFGLILCLVYVVMHDEELSLVISSSLEESDLDGRLDLYRVRRMLNYQLSEEYELTIPGDTEFVEGQ
PEAGAVQLASANAGELASETEEDKNIRMFKGEDNWSWGREVTPEDITDITPMNKEVAEKLLTQSENLDLEISLLLGLIEV
ESRFDPKNVSHAGAVGIMQIMPGTAQALADKNDFGYEYEKLFDPFYNIKLGTIQLNYLLNQYDGDIHKALTAYNRGPGGL
QSYIARTNSAQSGFSRWVLEEAERFEEELNR

Specific function: Murein-Degrading Enzyme. Catalyzes The Cleavage Of The Glycosidic Bonds Between N-Acetylmuramic Acid And N- Acetylglucosamine Residues In Peptidoglycan. May Play A Role In Recycling Of Muropeptides During Cell Elongation And/Or Cell Division. [C]

COG id: COG0741

COG function: function code M; Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)

Gene ontology:

Cell location: Periplasmic Protein. Tightly Associated With The Murein Sacculus [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transglycosylase slt family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008258
- InterPro:   IPR000189 [H]

Pfam domain/function: PF01464 SLT [H]

EC number: 3.2.1.- [C]

Molecular weight: Translated: 30556; Mature: 30556

Theoretical pI: Translated: 4.04; Mature: 4.04

Prosite motif: PS00922 TRANSGLYCOSYLASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSTATLDMVYLVVIFGLILCLVYVVMHDEELSLVISSSLEESDLDGRLDLYRVRRMLNY
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHCC
QLSEEYELTIPGDTEFVEGQPEAGAVQLASANAGELASETEEDKNIRMFKGEDNWSWGRE
CCCCCEEEECCCCCCEECCCCCCCEEEEECCCCCHHHHHCCCCCCEEEEECCCCCCCCCC
VTPEDITDITPMNKEVAEKLLTQSENLDLEISLLLGLIEVESRFDPKNVSHAGAVGIMQI
CCCHHHHCCCCCCHHHHHHHHHCCCCCCEEHHHHHHHHHHHHCCCCCCCCHHCCHHHHHH
MPGTAQALADKNDFGYEYEKLFDPFYNIKLGTIQLNYLLNQYDGDIHKALTAYNRGPGGL
CCCHHHHHCCCCCCCCHHHHHCCHHHCCEEEEEEEEEHHHHHCCHHHHHHHHHCCCCCHH
QSYIARTNSAQSGFSRWVLEEAERFEEELNR
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLSTATLDMVYLVVIFGLILCLVYVVMHDEELSLVISSSLEESDLDGRLDLYRVRRMLNY
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHCC
QLSEEYELTIPGDTEFVEGQPEAGAVQLASANAGELASETEEDKNIRMFKGEDNWSWGRE
CCCCCEEEECCCCCCEECCCCCCCEEEEECCCCCHHHHHCCCCCCEEEEECCCCCCCCCC
VTPEDITDITPMNKEVAEKLLTQSENLDLEISLLLGLIEVESRFDPKNVSHAGAVGIMQI
CCCHHHHCCCCCCHHHHHHHHHCCCCCCEEHHHHHHHHHHHHCCCCCCCCHHCCHHHHHH
MPGTAQALADKNDFGYEYEKLFDPFYNIKLGTIQLNYLLNQYDGDIHKALTAYNRGPGGL
CCCHHHHHCCCCCCCCHHHHHCCHHHCCEEEEEEEEEHHHHHCCHHHHHHHHHCCCCCHH
QSYIARTNSAQSGFSRWVLEEAERFEEELNR
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Muramic Acid Residue (N-Acetylmuramic Acid And N-Acetylglucosamine Residues) [C]

Specific reaction: Cleavage Of The Beta-1,4-Glycosidic Bond Between N-Acetylmuramic Acid And N-Acetylglucosamine Residues, Thereby Conserving The Energy In A Newly Synthesized 1,6-Anhydrobond In The Muramic Acid Residue. [C]

General reaction: Cleavage Of The Beta-1,4-Glycosidic Bond [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]