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The map label for this gene is tig [H]

Identifier: 188586891

GI number: 188586891

Start: 2426841

End: 2427359

Strand: Reverse

Name: tig [H]

Synonym: Nther_2282

Alternate gene names: 188586891

Gene position: 2427359-2426841 (Counterclockwise)

Preceding gene: 188586892

Following gene: 188586890

Centisome position: 76.68

GC content: 36.22

Gene sequence:

>519_bases
TTGAAATATAAGGGATATGATATCTCAATAAAACTGGGTGATTATCGTAAAATCTGTAAACAAATTGGCTGTCAAGAAGA
TTATCAGAACAGCCAACATCAGATTTTAGAATCGATACTGAATGACTCCCAGATTAAAATCCCCCGGGAACTGACATTGC
AAGAGGCAAATGACATGCTAAAAGACATGGAAAAACAGATCCGTTATCATGGTAAAAATTTATTCGAGTATTTACAAGAA
CAAGACAAATCAATTAATGAATTTAAAGAGGAACTGGCTGAACAAGCCGAATACAGATTAAAGGTGGAACTTTTGCTTAT
TAAGATAGCTGAACAAGAAGATATATCTGCGACTACGGAGGAACTTGACGAGGAAATAAATCAATTAGCCCGGGAGAATC
AGATTCCCTTCGAAGCAGCTAAAGAAAAAGTAACCCTGCAAGGGGCGCAGTCTAAATTAGAACGAAAGATAATGCTAGAA
AAAACTGCGGATTTTTTGCTAAACTTGGCAAGAAGTTAA

Upstream 100 bases:

>100_bases
CAGCTTATTCCATTAATTCTCCCAGGATGATTGTTGTTGCTAACAAAGATGATTCAAATCTATAGACATATAGATAATAA
ACAATAATGGAGGGTTTCAG

Downstream 100 bases:

>100_bases
TCTAAAAGTGTTTTAAGTTGAAAATGCTTTAAGTTGAAAATTGATATCAGATATCAGGTTAGGGTGATTTTCGTTATGTT
ATGGCAGCGCTGGTTTCTAA

Product: trigger factor domain protein

Products: NA

Alternate protein names: TF [H]

Number of amino acids: Translated: 172; Mature: 172

Protein sequence:

>172_residues
MKYKGYDISIKLGDYRKICKQIGCQEDYQNSQHQILESILNDSQIKIPRELTLQEANDMLKDMEKQIRYHGKNLFEYLQE
QDKSINEFKEELAEQAEYRLKVELLLIKIAEQEDISATTEELDEEINQLARENQIPFEAAKEKVTLQGAQSKLERKIMLE
KTADFLLNLARS

Sequences:

>Translated_172_residues
MKYKGYDISIKLGDYRKICKQIGCQEDYQNSQHQILESILNDSQIKIPRELTLQEANDMLKDMEKQIRYHGKNLFEYLQE
QDKSINEFKEELAEQAEYRLKVELLLIKIAEQEDISATTEELDEEINQLARENQIPFEAAKEKVTLQGAQSKLERKIMLE
KTADFLLNLARS
>Mature_172_residues
MKYKGYDISIKLGDYRKICKQIGCQEDYQNSQHQILESILNDSQIKIPRELTLQEANDMLKDMEKQIRYHGKNLFEYLQE
QDKSINEFKEELAEQAEYRLKVELLLIKIAEQEDISATTEELDEEINQLARENQIPFEAAKEKVTLQGAQSKLERKIMLE
KTADFLLNLARS

Specific function: Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation [H]

COG id: COG0544

COG function: function code O; FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PPIase FKBP-type domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001179
- InterPro:   IPR005215
- InterPro:   IPR008880
- InterPro:   IPR008881 [H]

Pfam domain/function: PF00254 FKBP_C; PF05698 Trigger_C; PF05697 Trigger_N [H]

EC number: NA

Molecular weight: Translated: 20216; Mature: 20216

Theoretical pI: Translated: 4.64; Mature: 4.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYKGYDISIKLGDYRKICKQIGCQEDYQNSQHQILESILNDSQIKIPRELTLQEANDML
CCCCCEEEEEEECHHHHHHHHCCCCCHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
KDMEKQIRYHGKNLFEYLQEQDKSINEFKEELAEQAEYRLKVELLLIKIAEQEDISATTE
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
ELDEEINQLARENQIPFEAAKEKVTLQGAQSKLERKIMLEKTADFLLNLARS
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKYKGYDISIKLGDYRKICKQIGCQEDYQNSQHQILESILNDSQIKIPRELTLQEANDML
CCCCCEEEEEEECHHHHHHHHCCCCCHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
KDMEKQIRYHGKNLFEYLQEQDKSINEFKEELAEQAEYRLKVELLLIKIAEQEDISATTE
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
ELDEEINQLARENQIPFEAAKEKVTLQGAQSKLERKIMLEKTADFLLNLARS
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA