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The map label for this gene is ydhY [H]

Identifier: 188586889

GI number: 188586889

Start: 2424667

End: 2425347

Strand: Reverse

Name: ydhY [H]

Synonym: Nther_2280

Alternate gene names: 188586889

Gene position: 2425347-2424667 (Counterclockwise)

Preceding gene: 188586890

Following gene: 188586888

Centisome position: 76.62

GC content: 42.29

Gene sequence:

>681_bases
ATGTCAGAAAACAACTTTTTTACTTCTATTATTAAAGCACCTATTAACAGGCGAAAATTCTTAAAAATTAGTGGTGCCGG
TGCAGCTTTGACAGCAGCTGGTCTAAGTTTATCAGGATGTGGTAAAGACAGCAGTGTTGAGGCCGGCGAAGATCTATCAT
CTTCCGAGTATATGCTGGTAGTTGATTCCACTAGGTGTTCAGGATGTCGCCGGTGTGAAACTATTTGCTCAGTCTTCAAC
CGAGGAAGTTCCAACCCGAATGTTTCGGGAATCAAAATTGCTCGAAATCAAAATTATGGTCAACAAAGCTCCACTTTAGG
CTTCTGGAATGGAGAGGGATTGTTTGGCAACTTCAGAATTATACCAGAAACTTGCATTCAGTGTGAAGAACCAGTAATGT
GTGCAGAAGTATGCCCCCAAAACGCAATTGGTAGCCATCCTGAAACAGGGGCTAGAGTTATTGATGAAGATGAATGCGTT
GGATGTGGTGAATGTGTGGATGCTTGTCCTTGGGAAATGATTGCTATGGATCCCAATGATAATGTGGCAGCTAAGTGTCA
TATGTGCCATGGTGATCCACAGTGTGCTGCTAACTGTCCAAATGGTGCTATAAGCTTAGAAAGATGGCAGGATAGGTCCA
AAGATCAACCTATTAGAAACCATGAATCGGTCTTATCATAA

Upstream 100 bases:

>100_bases
TAACATTGAAATCTATCATTAAATATAGATATTTTTTAGGAGGTGGTTTTTACCCGTCCTTTAATCTGTTTAATTATTAC
TATATAAAAGGGGGATAGTT

Downstream 100 bases:

>100_bases
TCGTAGTTAAATACTTGTCAAAACTACACTCTCAGACAAGGAGGTTTTGCTGATGACTAACCCTGGTGGTTGGGCTGGAA
AGATACTCAGGGTGAATCTT

Product: 4Fe-4S ferredoxin iron-sulfur binding domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 226; Mature: 225

Protein sequence:

>226_residues
MSENNFFTSIIKAPINRRKFLKISGAGAALTAAGLSLSGCGKDSSVEAGEDLSSSEYMLVVDSTRCSGCRRCETICSVFN
RGSSNPNVSGIKIARNQNYGQQSSTLGFWNGEGLFGNFRIIPETCIQCEEPVMCAEVCPQNAIGSHPETGARVIDEDECV
GCGECVDACPWEMIAMDPNDNVAAKCHMCHGDPQCAANCPNGAISLERWQDRSKDQPIRNHESVLS

Sequences:

>Translated_226_residues
MSENNFFTSIIKAPINRRKFLKISGAGAALTAAGLSLSGCGKDSSVEAGEDLSSSEYMLVVDSTRCSGCRRCETICSVFN
RGSSNPNVSGIKIARNQNYGQQSSTLGFWNGEGLFGNFRIIPETCIQCEEPVMCAEVCPQNAIGSHPETGARVIDEDECV
GCGECVDACPWEMIAMDPNDNVAAKCHMCHGDPQCAANCPNGAISLERWQDRSKDQPIRNHESVLS
>Mature_225_residues
SENNFFTSIIKAPINRRKFLKISGAGAALTAAGLSLSGCGKDSSVEAGEDLSSSEYMLVVDSTRCSGCRRCETICSVFNR
GSSNPNVSGIKIARNQNYGQQSSTLGFWNGEGLFGNFRIIPETCIQCEEPVMCAEVCPQNAIGSHPETGARVIDEDECVG
CGECVDACPWEMIAMDPNDNVAAKCHMCHGDPQCAANCPNGAISLERWQDRSKDQPIRNHESVLS

Specific function: Unknown

COG id: COG0437

COG function: function code C; Fe-S-cluster-containing hydrogenase components 1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 4 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787963, Length=207, Percent_Identity=36.231884057971, Blast_Score=114, Evalue=5e-27,
Organism=Escherichia coli, GI1789370, Length=208, Percent_Identity=31.25, Blast_Score=83, Evalue=1e-17,
Organism=Escherichia coli, GI1787122, Length=159, Percent_Identity=30.8176100628931, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI1787872, Length=159, Percent_Identity=30.8176100628931, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI2367345, Length=203, Percent_Identity=25.1231527093596, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI226510944, Length=204, Percent_Identity=25, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1790326, Length=160, Percent_Identity=27.5, Blast_Score=65, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001450
- InterPro:   IPR017896
- InterPro:   IPR017900 [H]

Pfam domain/function: PF00037 Fer4 [H]

EC number: NA

Molecular weight: Translated: 24323; Mature: 24192

Theoretical pI: Translated: 4.69; Mature: 4.69

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

7.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
10.2 %Cys+Met (Translated Protein)
7.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
9.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSENNFFTSIIKAPINRRKFLKISGAGAALTAAGLSLSGCGKDSSVEAGEDLSSSEYMLV
CCCCHHHHHHHHCCCCCCEEEEEECCCCEEHCCCCEEECCCCCCCCCCCCCCCCCCEEEE
VDSTRCSGCRRCETICSVFNRGSSNPNVSGIKIARNQNYGQQSSTLGFWNGEGLFGNFRI
EECCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCEEEEECCCCCEECEEE
IPETCIQCEEPVMCAEVCPQNAIGSHPETGARVIDEDECVGCGECVDACPWEMIAMDPND
CCHHHCCCCCCCHHHHHCCCCCCCCCCCCCCEEECCCCCCCCHHHHHCCCCEEEEECCCC
NVAAKCHMCHGDPQCAANCPNGAISLERWQDRSKDQPIRNHESVLS
CEEEEEEEECCCCCCCCCCCCCCEEHHHHHCCCCCCCCCCHHHHCC
>Mature Secondary Structure 
SENNFFTSIIKAPINRRKFLKISGAGAALTAAGLSLSGCGKDSSVEAGEDLSSSEYMLV
CCCHHHHHHHHCCCCCCEEEEEECCCCEEHCCCCEEECCCCCCCCCCCCCCCCCCEEEE
VDSTRCSGCRRCETICSVFNRGSSNPNVSGIKIARNQNYGQQSSTLGFWNGEGLFGNFRI
EECCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCEEEEECCCCCEECEEE
IPETCIQCEEPVMCAEVCPQNAIGSHPETGARVIDEDECVGCGECVDACPWEMIAMDPND
CCHHHCCCCCCCHHHHHCCCCCCCCCCCCCCEEECCCCCCCCHHHHHCCCCEEEEECCCC
NVAAKCHMCHGDPQCAANCPNGAISLERWQDRSKDQPIRNHESVLS
CEEEEEEEECCCCCCCCCCCCCCEEHHHHHCCCCCCCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: Iron-Sulfur; Iron-Sulfur; Iron-Sulfur; Iron-Sulfur; Iron-Sulfur; Iron-Sulfur; Iron-Sulfur; Iron-Sulfur [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]