Click here to switch to the map view.

The map label for this gene is ywqD [H]

Identifier: 188586864

GI number: 188586864

Start: 2397647

End: 2398294

Strand: Reverse

Name: ywqD [H]

Synonym: Nther_2255

Alternate gene names: 188586864

Gene position: 2398294-2397647 (Counterclockwise)

Preceding gene: 188586865

Following gene: 188586863

Centisome position: 75.76

GC content: 39.66

Gene sequence:

>648_bases
TTGAAAACTCCTTCCGATTTCCCATTTAGCAATGAAAAAAAGAAAACAAACCTGGAGTTATATCGAATTAAGCAAAATTT
AAAAAGTGTAATGGTGACAAGTTCAGAGGACAACACGGGAAAGTCAACAGTAGCTGCCAAACTTGCCATTAACGATTGTA
GAAATGACAGAAAAATCCTACTGATAGACTGTGATTTTCAGGAGCCATCTCAGCACAGTCTGTTCGGGGTACAAGACAAT
CCTGGTTTTTTCGATGTAATAGACAATTCCAGCCTTCAGTTATCAAAGGTAATTCAAAGACCTGAATCCTTTATGGATAA
ACCCGTGGATTTTCTAGATACAGATTATCCTGATATCCTTACTATAGGTTCACTTCCCAAGTATCCCCTTGACCAGTTAA
ACTCTCAATCTGGACAAGCCTTATTACAACAGTTGTCCCAGAAGTATCATACAATTGTTATTGATGCACCATGTGTCTAT
GAGGAGACGGACCTGTCAACTTTCGCCAGCTATCTGGAGGGTATCGTCCTGGTAGTGAGCTCTCAAGAAGCTAGCAGTAA
TAGTGAGGATGATGAAAGCAAGGAAGATGATACTCAAAATCAGCTTGACAAACTGCAAGGCAAAGTTCTAGGAGTGGTTT
TCAATTAG

Upstream 100 bases:

>100_bases
AAAATCATGTATATTGGTACTAGAAAATTATGGAACATAATTCCTAAATTTATTAACGAGGAGTTGGACCAGAATACTTG
AAAAGGGGTGAAAAGTACTA

Downstream 100 bases:

>100_bases
CTTGAACTAGGTTAGACTGCAGTTAGCCCAATAGATAGCATTGACATATTCTGGATGCTCCTACAGCTAAAACAGTGGCT
TTCTGTTGCTGTTTAACGTA

Product: capsular polysaccharide biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 215; Mature: 215

Protein sequence:

>215_residues
MKTPSDFPFSNEKKKTNLELYRIKQNLKSVMVTSSEDNTGKSTVAAKLAINDCRNDRKILLIDCDFQEPSQHSLFGVQDN
PGFFDVIDNSSLQLSKVIQRPESFMDKPVDFLDTDYPDILTIGSLPKYPLDQLNSQSGQALLQQLSQKYHTIVIDAPCVY
EETDLSTFASYLEGIVLVVSSQEASSNSEDDESKEDDTQNQLDKLQGKVLGVVFN

Sequences:

>Translated_215_residues
MKTPSDFPFSNEKKKTNLELYRIKQNLKSVMVTSSEDNTGKSTVAAKLAINDCRNDRKILLIDCDFQEPSQHSLFGVQDN
PGFFDVIDNSSLQLSKVIQRPESFMDKPVDFLDTDYPDILTIGSLPKYPLDQLNSQSGQALLQQLSQKYHTIVIDAPCVY
EETDLSTFASYLEGIVLVVSSQEASSNSEDDESKEDDTQNQLDKLQGKVLGVVFN
>Mature_215_residues
MKTPSDFPFSNEKKKTNLELYRIKQNLKSVMVTSSEDNTGKSTVAAKLAINDCRNDRKILLIDCDFQEPSQHSLFGVQDN
PGFFDVIDNSSLQLSKVIQRPESFMDKPVDFLDTDYPDILTIGSLPKYPLDQLNSQSGQALLQQLSQKYHTIVIDAPCVY
EETDLSTFASYLEGIVLVVSSQEASSNSEDDESKEDDTQNQLDKLQGKVLGVVFN

Specific function: May be involved in the regulation of capsular polysaccharide biosynthesis. Autophosphorylates in vitro. Phosphorylates and activates in vitro two UDP-glucose dehydrogenases, YwqF and TuaD, as well as the DNA-binding proteins Ssb and SsbB [H]

COG id: COG0489

COG function: function code D; ATPases involved in chromosome partitioning

Gene ontology:

Cell location: Inner membrane (Probable) [C]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CpsD/CapB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002586
- InterPro:   IPR005702 [H]

Pfam domain/function: PF01656 CbiA [H]

EC number: =2.7.10.2 [H]

Molecular weight: Translated: 24084; Mature: 24084

Theoretical pI: Translated: 4.25; Mature: 4.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTPSDFPFSNEKKKTNLELYRIKQNLKSVMVTSSEDNTGKSTVAAKLAINDCRNDRKIL
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHEEECCCCCCCCHHHEEHEEHHHCCCCCEEE
LIDCDFQEPSQHSLFGVQDNPGFFDVIDNSSLQLSKVIQRPESFMDKPVDFLDTDYPDIL
EEECCCCCCCCCCEEEECCCCCEEEEECCCCHHHHHHHHCHHHHHCCCCHHHCCCCCCEE
TIGSLPKYPLDQLNSQSGQALLQQLSQKYHTIVIDAPCVYEETDLSTFASYLEGIVLVVS
EECCCCCCCHHHCCCCHHHHHHHHHHHHHCEEEEECCCCCCCCCHHHHHHHHCCEEEEEE
SQEASSNSEDDESKEDDTQNQLDKLQGKVLGVVFN
CCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEEEC
>Mature Secondary Structure
MKTPSDFPFSNEKKKTNLELYRIKQNLKSVMVTSSEDNTGKSTVAAKLAINDCRNDRKIL
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHEEECCCCCCCCHHHEEHEEHHHCCCCCEEE
LIDCDFQEPSQHSLFGVQDNPGFFDVIDNSSLQLSKVIQRPESFMDKPVDFLDTDYPDIL
EEECCCCCCCCCCEEEECCCCCEEEEECCCCHHHHHHHHCHHHHHCCCCHHHCCCCCCEE
TIGSLPKYPLDQLNSQSGQALLQQLSQKYHTIVIDAPCVYEETDLSTFASYLEGIVLVVS
EECCCCCCCHHHCCCCHHHHHHHHHHHHHCEEEEECCCCCCCCCHHHHHHHHCCEEEEEE
SQEASSNSEDDESKEDDTQNQLDKLQGKVLGVVFN
CCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377 [H]