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The map label for this gene is csrA

Identifier: 188586841

GI number: 188586841

Start: 2370805

End: 2371041

Strand: Reverse

Name: csrA

Synonym: Nther_2232

Alternate gene names: 188586841

Gene position: 2371041-2370805 (Counterclockwise)

Preceding gene: 188586842

Following gene: 188586840

Centisome position: 74.9

GC content: 40.93

Gene sequence:

>237_bases
ATGCTTGTACTCACTAGAAAGCAAAACGAATCCATTATGATAGGTGATGACATAGAAATTACGGTAGTGGGTACAGAAGG
AGACAAAGTGCGCCTGGGTATCAAAGCCCCCAAAGATGTGGAAATTCACAGGGCAGAAGTATATCAAAAGATCCAGGAGG
AGAATGTGAAAGCTTCCCAGGTTTCAGAAAATGTGTTGGATAAACTGTCCGATGCACTGCAAAAGAAAAATAAATGA

Upstream 100 bases:

>100_bases
ACAGGCGTTTAGGTAAGCAGATAGTATTACATCCATCGGACTATACCACTAAACATCCCTTATTCAATGATCAGGGAACC
AAAGCGAGAGGTGCAGTCTG

Downstream 100 bases:

>100_bases
TAAAATATCAAATGGGGCCGAAAAACAGAGCAAAACAAAGGACAAGCTATTTATAATATTATAATCGCTCGTATTTCTAC
CTAAACACATTAATGAAAAT

Product: carbon storage regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 78; Mature: 78

Protein sequence:

>78_residues
MLVLTRKQNESIMIGDDIEITVVGTEGDKVRLGIKAPKDVEIHRAEVYQKIQEENVKASQVSENVLDKLSDALQKKNK

Sequences:

>Translated_78_residues
MLVLTRKQNESIMIGDDIEITVVGTEGDKVRLGIKAPKDVEIHRAEVYQKIQEENVKASQVSENVLDKLSDALQKKNK
>Mature_78_residues
MLVLTRKQNESIMIGDDIEITVVGTEGDKVRLGIKAPKDVEIHRAEVYQKIQEENVKASQVSENVLDKLSDALQKKNK

Specific function: Could accelerate the degradation of some genes transcripts potentially through selective RNA binding

COG id: COG1551

COG function: function code T; Carbon storage regulator (could also regulate swarming and quorum sensing)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CsrA family

Homologues:

Organism=Escherichia coli, GI1789047, Length=59, Percent_Identity=50.8474576271186, Blast_Score=75, Evalue=7e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CSRA_NATTJ (B2A826)

Other databases:

- EMBL:   CP001034
- RefSeq:   YP_001918386.1
- ProteinModelPortal:   B2A826
- SMR:   B2A826
- GeneID:   6315233
- GenomeReviews:   CP001034_GR
- KEGG:   nth:Nther_2232
- HOGENOM:   HBG724655
- OMA:   RIGINAP
- ProtClustDB:   PRK01712
- HAMAP:   MF_00167
- InterPro:   IPR003751
- ProDom:   PD009007
- TIGRFAMs:   TIGR00202

Pfam domain/function: PF02599 CsrA

EC number: NA

Molecular weight: Translated: 8776; Mature: 8776

Theoretical pI: Translated: 5.88; Mature: 5.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVLTRKQNESIMIGDDIEITVVGTEGDKVRLGIKAPKDVEIHRAEVYQKIQEENVKASQ
CEEEEECCCCEEEECCCEEEEEEECCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCHHH
VSENVLDKLSDALQKKNK
HHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLVLTRKQNESIMIGDDIEITVVGTEGDKVRLGIKAPKDVEIHRAEVYQKIQEENVKASQ
CEEEEECCCCEEEECCCEEEEEEECCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCHHH
VSENVLDKLSDALQKKNK
HHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA