Click here to switch to the map view.

The map label for this gene is yedQ [C]

Identifier: 188586812

GI number: 188586812

Start: 2339430

End: 2340734

Strand: Reverse

Name: yedQ [C]

Synonym: Nther_2203

Alternate gene names: 188586812

Gene position: 2340734-2339430 (Counterclockwise)

Preceding gene: 188586813

Following gene: 188586811

Centisome position: 73.94

GC content: 37.32

Gene sequence:

>1305_bases
ATGGCTTCATTGTATATAGAAGGTGGCAGAATTTTCATTAAAAAAGGTGATTTTCACTGTCAAGTAGTTGGGGGATTGTC
AATTCTGACAGGAATATCTGGTGTTATAAACCCTATTGCTGTAGGTCAGTGGTGGTACGACCCTTGGGTTTTTTTGATCA
CATTTGTATTGAATTTAGCCCTAGCCCTAGGAATTTTATGGCTCTATATGAGAAGGTTAAATCAAGACTTGTTAGAGCTA
AACACACGCATGCAAAAGCACATTGACAAACTAGAGCATTTGAGCTTACACGATCAACTGACAGGTATCTATAACAGGGC
TTATTTTGAAGAGGAACTTGAACGACTGGATAACAGTCAGGAGTATCCTGTGACTGTTATTTCTTTTGATGTGGATGGTT
TAAAGTTAATTAACGATACCATAGGACATGAGCAGGGAGATGAGCTGATTAAAACTGCAGCTAAAATTATTGATAAATCC
CTAAGGTCTTCAGATATTTTTGCCAGAGTAGGGGGAGATGAGTTTGCAATTTTACTTCCCAATACAAATAATTCAAATGG
GGGCAAGGTGGTCAACAGGATTTTAAATAACATTCAAAAATATAATCAGAAAAATGGTAAGCTACCCGTTCAAATATCAG
TGGGTAAGGCAACGGCAAGTTATCCTGAAGAATCATTAAAGGGTGCTTTGACTGAAGCTGATAAAAATATGTATCAAAAT
AAAATGCGAATTGAATTGAGGGACAATTCACCCCTTGTGAATCTATTTATCAAACGACCTCTTGAAAGGGATTATTCAAC
TACGGATCATGCTAATAGAATTGGGGAATTAGGTAAGGAACTGGGCAGGAGATTACAGTTATCCCAAGACAGCTTAATGA
AAATTGATTTACTGGCTAAAATACACGATATTGGCAAAGGTGGCATCCCCGATGGAATCTTATTCAAACCTGGACCTCTT
GATAAGAGAGAATGGGAAATAATGAAACAACATTCTGAAAGAGGTTATAAAATTGCTTTATCGTGTCCTGATTTGATTGA
TGTAGCAGACTTAGTGTTAAAACATCATGAAAGTTGGGATGGAACAGGTTATCCCCTGGGATTAAAAGAAGATGAAATCC
CCATAGAATGTAGGATTCATTCGATAGTTGAAGCTTATGATGCTATGACTAGAGATCGACCTTATAGGAAAGCATTATCA
CAAGAGCAAGCTCTGGAAGAACTTAAGCGCTGTAAGAGTGGGCAGTTTGATCCTAAAATTGTAGAGGAGTTTCAGGCTAT
TTTATATTTGAAAAGGAGCTGTTAG

Upstream 100 bases:

>100_bases
GGTGGAGTATTCTTCTTGGCTTTGTCGGATTTGACATTATCGGAAGCAATTGAACCGGTGTCTGGTGGACTGGTTTCAAC
ACTGGTGCTCTACTTTTTTT

Downstream 100 bases:

>100_bases
CTGTGAAATATAAAGTTTACTCAAAGGTTTGGTTGGAAAATCAAAATGGGAGAGTTTTTGGGGACGGGCCGGCCAAGCTC
CTGGAGTATATCGAAGAGTT

Product: diguanylate cyclase and metal dependent phosphohydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 434; Mature: 433

Protein sequence:

>434_residues
MASLYIEGGRIFIKKGDFHCQVVGGLSILTGISGVINPIAVGQWWYDPWVFLITFVLNLALALGILWLYMRRLNQDLLEL
NTRMQKHIDKLEHLSLHDQLTGIYNRAYFEEELERLDNSQEYPVTVISFDVDGLKLINDTIGHEQGDELIKTAAKIIDKS
LRSSDIFARVGGDEFAILLPNTNNSNGGKVVNRILNNIQKYNQKNGKLPVQISVGKATASYPEESLKGALTEADKNMYQN
KMRIELRDNSPLVNLFIKRPLERDYSTTDHANRIGELGKELGRRLQLSQDSLMKIDLLAKIHDIGKGGIPDGILFKPGPL
DKREWEIMKQHSERGYKIALSCPDLIDVADLVLKHHESWDGTGYPLGLKEDEIPIECRIHSIVEAYDAMTRDRPYRKALS
QEQALEELKRCKSGQFDPKIVEEFQAILYLKRSC

Sequences:

>Translated_434_residues
MASLYIEGGRIFIKKGDFHCQVVGGLSILTGISGVINPIAVGQWWYDPWVFLITFVLNLALALGILWLYMRRLNQDLLEL
NTRMQKHIDKLEHLSLHDQLTGIYNRAYFEEELERLDNSQEYPVTVISFDVDGLKLINDTIGHEQGDELIKTAAKIIDKS
LRSSDIFARVGGDEFAILLPNTNNSNGGKVVNRILNNIQKYNQKNGKLPVQISVGKATASYPEESLKGALTEADKNMYQN
KMRIELRDNSPLVNLFIKRPLERDYSTTDHANRIGELGKELGRRLQLSQDSLMKIDLLAKIHDIGKGGIPDGILFKPGPL
DKREWEIMKQHSERGYKIALSCPDLIDVADLVLKHHESWDGTGYPLGLKEDEIPIECRIHSIVEAYDAMTRDRPYRKALS
QEQALEELKRCKSGQFDPKIVEEFQAILYLKRSC
>Mature_433_residues
ASLYIEGGRIFIKKGDFHCQVVGGLSILTGISGVINPIAVGQWWYDPWVFLITFVLNLALALGILWLYMRRLNQDLLELN
TRMQKHIDKLEHLSLHDQLTGIYNRAYFEEELERLDNSQEYPVTVISFDVDGLKLINDTIGHEQGDELIKTAAKIIDKSL
RSSDIFARVGGDEFAILLPNTNNSNGGKVVNRILNNIQKYNQKNGKLPVQISVGKATASYPEESLKGALTEADKNMYQNK
MRIELRDNSPLVNLFIKRPLERDYSTTDHANRIGELGKELGRRLQLSQDSLMKIDLLAKIHDIGKGGIPDGILFKPGPLD
KREWEIMKQHSERGYKIALSCPDLIDVADLVLKHHESWDGTGYPLGLKEDEIPIECRIHSIVEAYDAMTRDRPYRKALSQ
EQALEELKRCKSGQFDPKIVEEFQAILYLKRSC

Specific function: Unknown

COG id: COG2206

COG function: function code T; HD-GYP domain

Gene ontology:

Cell location: Integral membrane protein (Potential) [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HD domain [H]

Homologues:

Organism=Escherichia coli, GI87082007, Length=216, Percent_Identity=31.4814814814815, Blast_Score=98, Evalue=1e-21,
Organism=Escherichia coli, GI1787262, Length=246, Percent_Identity=29.6747967479675, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI1786584, Length=219, Percent_Identity=29.6803652968037, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI1788381, Length=124, Percent_Identity=37.0967741935484, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1787802, Length=226, Percent_Identity=27.8761061946903, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI87081974, Length=183, Percent_Identity=30.6010928961749, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788085, Length=156, Percent_Identity=30.7692307692308, Blast_Score=76, Evalue=5e-15,
Organism=Escherichia coli, GI1787816, Length=147, Percent_Identity=29.2517006802721, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI87081881, Length=158, Percent_Identity=30.379746835443, Blast_Score=72, Evalue=7e-14,
Organism=Escherichia coli, GI145693134, Length=165, Percent_Identity=32.1212121212121, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1787541, Length=163, Percent_Identity=28.8343558282209, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1788956, Length=171, Percent_Identity=33.9181286549708, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR003607 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 49344; Mature: 49213

Theoretical pI: Translated: 6.59; Mature: 6.59

Prosite motif: PS50887 GGDEF ; PS00867 CPSASE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASLYIEGGRIFIKKGDFHCQVVGGLSILTGISGVINPIAVGQWWYDPWVFLITFVLNLA
CCEEEEECCEEEEEECCEEEEEECHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
LALGILWLYMRRLNQDLLELNTRMQKHIDKLEHLSLHDQLTGIYNRAYFEEELERLDNSQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
EYPVTVISFDVDGLKLINDTIGHEQGDELIKTAAKIIDKSLRSSDIFARVGGDEFAILLP
CCCEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEEC
NTNNSNGGKVVNRILNNIQKYNQKNGKLPVQISVGKATASYPEESLKGALTEADKNMYQN
CCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHC
KMRIELRDNSPLVNLFIKRPLERDYSTTDHANRIGELGKELGRRLQLSQDSLMKIDLLAK
CEEEEECCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
IHDIGKGGIPDGILFKPGPLDKREWEIMKQHSERGYKIALSCPDLIDVADLVLKHHESWD
HHHCCCCCCCCCCEECCCCCCHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCC
GTGYPLGLKEDEIPIECRIHSIVEAYDAMTRDRPYRKALSQEQALEELKRCKSGQFDPKI
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHH
VEEFQAILYLKRSC
HHHHHHHHHHHHCC
>Mature Secondary Structure 
ASLYIEGGRIFIKKGDFHCQVVGGLSILTGISGVINPIAVGQWWYDPWVFLITFVLNLA
CEEEEECCEEEEEECCEEEEEECHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
LALGILWLYMRRLNQDLLELNTRMQKHIDKLEHLSLHDQLTGIYNRAYFEEELERLDNSQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
EYPVTVISFDVDGLKLINDTIGHEQGDELIKTAAKIIDKSLRSSDIFARVGGDEFAILLP
CCCEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEEC
NTNNSNGGKVVNRILNNIQKYNQKNGKLPVQISVGKATASYPEESLKGALTEADKNMYQN
CCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHC
KMRIELRDNSPLVNLFIKRPLERDYSTTDHANRIGELGKELGRRLQLSQDSLMKIDLLAK
CEEEEECCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
IHDIGKGGIPDGILFKPGPLDKREWEIMKQHSERGYKIALSCPDLIDVADLVLKHHESWD
HHHCCCCCCCCCCEECCCCCCHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCC
GTGYPLGLKEDEIPIECRIHSIVEAYDAMTRDRPYRKALSQEQALEELKRCKSGQFDPKI
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHH
VEEFQAILYLKRSC
HHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]