| Definition | Natranaerobius thermophilus JW/NM-WN-LF, complete genome. |
|---|---|
| Accession | NC_010718 |
| Length | 3,165,557 |
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The map label for this gene is oppD [C]
Identifier: 188586808
GI number: 188586808
Start: 2335060
End: 2336097
Strand: Direct
Name: oppD [C]
Synonym: Nther_2199
Alternate gene names: 188586808
Gene position: 2335060-2336097 (Clockwise)
Preceding gene: 188586807
Following gene: 188586809
Centisome position: 73.76
GC content: 42.87
Gene sequence:
>1038_bases ATGTCACTATTAGAAGTAAAAAATCTCAAAATTTATTACGACACTAAAGGCAGCGATTTAAAAGCTGTAGACGATATAAG CTTTGATATCCCAGAAGGTGAAAACCTGGGACTGGTGGGAGAAAGTGGTTGTGGTAAAACTACGGCTGCCAAATCCATCA TCCGTCTGCTACCCAAAAATGGACGAATAGCAGGTGGTTCCATTAATTATAAAGGTCAAAACTTGGCCGCCATGACAACA GAAGAAATCAGAAAAACACGCTGGAAAGAAATTTCGATGATATCTCAAAGTGCCATGAGTGCTTTAAATCCAGTATACAA AGTAGGCGATCAGATTGTAGAAGCCATTAGGGCCCACGAAAAAATGCCCAAAAAAGAAGCTATGAACCGAGCAGAAGAAC TCTTTGACATTGTAGGGCTGGAAAAAAAGCGTTTATCAGCCTATCCCCATCAAATGAGCGGAGGGATGAAACAAAGAGCG ATTATAGCCATGGCACTTTGTCTCGATCCCGGTTTAATTATTGCCGATGAACCGACTACAGCCCTGGACGTAGTTGTTCA GGACCGGATACTAAATAAAATTGTGGAAATCCAGAAGAGCCACGGAAGTTCCATGGTATTTATCACCCACGACATCTCTG TGGTAGCTGAAACTTGTGAACGTACTTGTGTCATGTATGCCGGTAAAATCATGGAACTGGGGCCTACTTCCAAGATCTTT AAAGATCCCAGGCATCCATACACCATGGGACTTCAAAATGCTTTTCCCAGCATTCAATTAGATCAAAAAGAACTGATCTC AATCCCTGGTTTCCCACCAAATCTGGTGGAACCACCTGCTGGTTGCATGTTTTATGACCGCTGCCCCTTCTGTGATGAAA AATGTGAAACGGAAGAACCCGAGACGGTACAAGTGGAAAAAGGCCATTATGTATCATGCCATTATGCAGAATATTACCAG CAATTCCGCGACAGAGCCAGTCAAAAGACAACTTGGGATGAAGTCAAAATCAGACAGCAGAAAAAGGGGGTAGTCTGA
Upstream 100 bases:
>100_bases TCCACCGGGAGTTGCAATTTCCCTGACCCTACTGGCAGTTTTCTTTGCATCCCGGGCTCTAGAAGTTGCAGTCAATCCCA GGTTAAGGAGGCGATAAATT
Downstream 100 bases:
>100_bases TATGAATATGCTAGACGTCAAAAATTTAAAAAAATACTATCCCGTAAACAGCGGTTTCCTGTACTCTCTCATGAAAAAAG AAACCAAGTATGTCAAAGCA
Product: oligopeptide/dipeptide ABC transporter, ATPase subunit
Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 345; Mature: 344
Protein sequence:
>345_residues MSLLEVKNLKIYYDTKGSDLKAVDDISFDIPEGENLGLVGESGCGKTTAAKSIIRLLPKNGRIAGGSINYKGQNLAAMTT EEIRKTRWKEISMISQSAMSALNPVYKVGDQIVEAIRAHEKMPKKEAMNRAEELFDIVGLEKKRLSAYPHQMSGGMKQRA IIAMALCLDPGLIIADEPTTALDVVVQDRILNKIVEIQKSHGSSMVFITHDISVVAETCERTCVMYAGKIMELGPTSKIF KDPRHPYTMGLQNAFPSIQLDQKELISIPGFPPNLVEPPAGCMFYDRCPFCDEKCETEEPETVQVEKGHYVSCHYAEYYQ QFRDRASQKTTWDEVKIRQQKKGVV
Sequences:
>Translated_345_residues MSLLEVKNLKIYYDTKGSDLKAVDDISFDIPEGENLGLVGESGCGKTTAAKSIIRLLPKNGRIAGGSINYKGQNLAAMTT EEIRKTRWKEISMISQSAMSALNPVYKVGDQIVEAIRAHEKMPKKEAMNRAEELFDIVGLEKKRLSAYPHQMSGGMKQRA IIAMALCLDPGLIIADEPTTALDVVVQDRILNKIVEIQKSHGSSMVFITHDISVVAETCERTCVMYAGKIMELGPTSKIF KDPRHPYTMGLQNAFPSIQLDQKELISIPGFPPNLVEPPAGCMFYDRCPFCDEKCETEEPETVQVEKGHYVSCHYAEYYQ QFRDRASQKTTWDEVKIRQQKKGVV >Mature_344_residues SLLEVKNLKIYYDTKGSDLKAVDDISFDIPEGENLGLVGESGCGKTTAAKSIIRLLPKNGRIAGGSINYKGQNLAAMTTE EIRKTRWKEISMISQSAMSALNPVYKVGDQIVEAIRAHEKMPKKEAMNRAEELFDIVGLEKKRLSAYPHQMSGGMKQRAI IAMALCLDPGLIIADEPTTALDVVVQDRILNKIVEIQKSHGSSMVFITHDISVVAETCERTCVMYAGKIMELGPTSKIFK DPRHPYTMGLQNAFPSIQLDQKELISIPGFPPNLVEPPAGCMFYDRCPFCDEKCETEEPETVQVEKGHYVSCHYAEYYQQ FRDRASQKTTWDEVKIRQQKKGVV
Specific function: Probably part of a binding-protein-dependent transport system y4tOPQRS for a peptide. Probably responsible for energy coupling to the transport system [H]
COG id: COG0444
COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI42490749, Length=234, Percent_Identity=30.3418803418803, Blast_Score=88, Evalue=1e-17, Organism=Homo sapiens, GI9961250, Length=272, Percent_Identity=27.2058823529412, Blast_Score=75, Evalue=1e-13, Organism=Homo sapiens, GI4505771, Length=272, Percent_Identity=27.2058823529412, Blast_Score=75, Evalue=1e-13, Organism=Homo sapiens, GI9961252, Length=272, Percent_Identity=27.2058823529412, Blast_Score=75, Evalue=1e-13, Organism=Homo sapiens, GI47078218, Length=241, Percent_Identity=26.1410788381743, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI21536376, Length=232, Percent_Identity=28.0172413793103, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI45446740, Length=241, Percent_Identity=26.1410788381743, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI148612844, Length=248, Percent_Identity=26.6129032258064, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI255708477, Length=249, Percent_Identity=27.3092369477912, Blast_Score=67, Evalue=3e-11, Organism=Escherichia coli, GI48994883, Length=301, Percent_Identity=43.8538205980066, Blast_Score=279, Evalue=2e-76, Organism=Escherichia coli, GI1789963, Length=317, Percent_Identity=41.3249211356467, Blast_Score=275, Evalue=4e-75, Organism=Escherichia coli, GI1787759, Length=318, Percent_Identity=37.1069182389937, Blast_Score=234, Evalue=6e-63, Organism=Escherichia coli, GI1787500, Length=331, Percent_Identity=38.0664652567976, Blast_Score=224, Evalue=4e-60, Organism=Escherichia coli, GI145693107, Length=293, Percent_Identity=41.9795221843003, Blast_Score=213, Evalue=2e-56, Organism=Escherichia coli, GI1789962, Length=318, Percent_Identity=37.1069182389937, Blast_Score=204, Evalue=7e-54, Organism=Escherichia coli, GI1788506, Length=259, Percent_Identity=40.9266409266409, Blast_Score=199, Evalue=2e-52, Organism=Escherichia coli, GI1787758, Length=325, Percent_Identity=33.8461538461538, Blast_Score=187, Evalue=9e-49, Organism=Escherichia coli, GI1787548, Length=327, Percent_Identity=31.4984709480122, Blast_Score=178, Evalue=4e-46, Organism=Escherichia coli, GI1789891, Length=237, Percent_Identity=33.7552742616034, Blast_Score=141, Evalue=6e-35, Organism=Escherichia coli, GI48994997, Length=247, Percent_Identity=35.6275303643725, Blast_Score=140, Evalue=2e-34, Organism=Escherichia coli, GI1789890, Length=234, Percent_Identity=36.7521367521368, Blast_Score=129, Evalue=4e-31, Organism=Escherichia coli, GI1788225, Length=256, Percent_Identity=33.984375, Blast_Score=123, Evalue=2e-29, Organism=Escherichia coli, GI1786398, Length=244, Percent_Identity=31.1475409836066, Blast_Score=122, Evalue=4e-29, Organism=Escherichia coli, GI87081791, Length=277, Percent_Identity=31.7689530685921, Blast_Score=122, Evalue=5e-29, Organism=Escherichia coli, GI1787547, Length=255, Percent_Identity=29.4117647058824, Blast_Score=120, Evalue=9e-29, Organism=Escherichia coli, GI1789032, Length=233, Percent_Identity=31.3304721030043, Blast_Score=115, Evalue=6e-27, Organism=Escherichia coli, GI1788450, Length=228, Percent_Identity=29.8245614035088, Blast_Score=112, Evalue=5e-26, Organism=Escherichia coli, GI87081709, Length=259, Percent_Identity=29.7297297297297, Blast_Score=109, Evalue=2e-25, Organism=Escherichia coli, GI1786703, Length=233, Percent_Identity=30.4721030042918, Blast_Score=103, Evalue=2e-23, Organism=Escherichia coli, GI1787089, Length=227, Percent_Identity=33.0396475770925, Blast_Score=102, Evalue=5e-23, Organism=Escherichia coli, GI1787370, Length=249, Percent_Identity=28.5140562248996, Blast_Score=100, Evalue=2e-22, Organism=Escherichia coli, GI1787712, Length=252, Percent_Identity=27.7777777777778, Blast_Score=100, Evalue=2e-22, Organism=Escherichia coli, GI1790162, Length=248, Percent_Identity=27.8225806451613, Blast_Score=99, Evalue=4e-22, Organism=Escherichia coli, GI87081834, Length=228, Percent_Identity=29.3859649122807, Blast_Score=97, Evalue=2e-21, Organism=Escherichia coli, GI1788761, Length=246, Percent_Identity=27.2357723577236, Blast_Score=97, Evalue=2e-21, Organism=Escherichia coli, GI1787105, Length=235, Percent_Identity=31.063829787234, Blast_Score=97, Evalue=2e-21, Organism=Escherichia coli, GI1789672, Length=250, Percent_Identity=28.4, Blast_Score=91, Evalue=8e-20, Organism=Escherichia coli, GI1786872, Length=208, Percent_Identity=32.2115384615385, Blast_Score=91, Evalue=8e-20, Organism=Escherichia coli, GI1787029, Length=241, Percent_Identity=29.045643153527, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1790739, Length=242, Percent_Identity=26.0330578512397, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI87082267, Length=240, Percent_Identity=25.8333333333333, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI1789586, Length=222, Percent_Identity=30.1801801801802, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1790467, Length=228, Percent_Identity=26.3157894736842, Blast_Score=84, Evalue=2e-17, Organism=Escherichia coli, GI1786803, Length=228, Percent_Identity=24.5614035087719, Blast_Score=84, Evalue=2e-17, Organism=Escherichia coli, GI1786563, Length=233, Percent_Identity=29.6137339055794, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI48994943, Length=231, Percent_Identity=27.7056277056277, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI1788644, Length=199, Percent_Identity=29.1457286432161, Blast_Score=81, Evalue=8e-17, Organism=Escherichia coli, GI1787164, Length=209, Percent_Identity=31.5789473684211, Blast_Score=81, Evalue=8e-17, Organism=Escherichia coli, GI1789593, Length=243, Percent_Identity=25.9259259259259, Blast_Score=78, Evalue=7e-16, Organism=Escherichia coli, GI1786345, Length=225, Percent_Identity=25.3333333333333, Blast_Score=75, Evalue=6e-15, Organism=Escherichia coli, GI1789873, Length=212, Percent_Identity=28.3018867924528, Blast_Score=73, Evalue=3e-14, Organism=Escherichia coli, GI1786319, Length=229, Percent_Identity=25.764192139738, Blast_Score=68, Evalue=7e-13, Organism=Escherichia coli, GI1790525, Length=245, Percent_Identity=28.1632653061224, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI1787112, Length=225, Percent_Identity=26.6666666666667, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1789991, Length=237, Percent_Identity=29.1139240506329, Blast_Score=65, Evalue=6e-12, Organism=Escherichia coli, GI48995001, Length=216, Percent_Identity=24.537037037037, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI87081782, Length=223, Percent_Identity=25.1121076233184, Blast_Score=64, Evalue=2e-11, Organism=Caenorhabditis elegans, GI25146777, Length=245, Percent_Identity=28.1632653061224, Blast_Score=84, Evalue=9e-17, Organism=Caenorhabditis elegans, GI193211015, Length=239, Percent_Identity=30.5439330543933, Blast_Score=83, Evalue=2e-16, Organism=Caenorhabditis elegans, GI71996809, Length=239, Percent_Identity=30.5439330543933, Blast_Score=83, Evalue=2e-16, Organism=Caenorhabditis elegans, GI193211017, Length=239, Percent_Identity=30.5439330543933, Blast_Score=83, Evalue=2e-16, Organism=Caenorhabditis elegans, GI193209708, Length=249, Percent_Identity=27.710843373494, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI71984940, Length=238, Percent_Identity=30.2521008403361, Blast_Score=77, Evalue=2e-14, Organism=Caenorhabditis elegans, GI71992290, Length=260, Percent_Identity=28.4615384615385, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI193202349, Length=256, Percent_Identity=26.953125, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI17541710, Length=248, Percent_Identity=26.6129032258064, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI115534520, Length=208, Percent_Identity=27.8846153846154, Blast_Score=72, Evalue=6e-13, Organism=Caenorhabditis elegans, GI71992285, Length=246, Percent_Identity=29.2682926829268, Blast_Score=71, Evalue=8e-13, Organism=Caenorhabditis elegans, GI17567265, Length=226, Percent_Identity=26.5486725663717, Blast_Score=69, Evalue=5e-12, Organism=Caenorhabditis elegans, GI115533608, Length=234, Percent_Identity=26.4957264957265, Blast_Score=65, Evalue=4e-11, Organism=Saccharomyces cerevisiae, GI6324985, Length=248, Percent_Identity=25.4032258064516, Blast_Score=71, Evalue=3e-13, Organism=Saccharomyces cerevisiae, GI6323959, Length=236, Percent_Identity=26.271186440678, Blast_Score=66, Evalue=8e-12, Organism=Drosophila melanogaster, GI85726357, Length=256, Percent_Identity=24.21875, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI85725262, Length=223, Percent_Identity=27.3542600896861, Blast_Score=72, Evalue=7e-13, Organism=Drosophila melanogaster, GI28573571, Length=248, Percent_Identity=26.6129032258064, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI28573573, Length=248, Percent_Identity=26.6129032258064, Blast_Score=69, Evalue=5e-12, Organism=Drosophila melanogaster, GI24666092, Length=226, Percent_Identity=26.1061946902655, Blast_Score=69, Evalue=5e-12, Organism=Drosophila melanogaster, GI24643674, Length=255, Percent_Identity=25.4901960784314, Blast_Score=68, Evalue=7e-12, Organism=Drosophila melanogaster, GI21357907, Length=225, Percent_Identity=28, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI17136662, Length=228, Percent_Identity=24.5614035087719, Blast_Score=65, Evalue=8e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR010066 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 38602; Mature: 38471
Theoretical pI: Translated: 6.85; Mature: 6.85
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.6 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 6.7 %Cys+Met (Translated Protein) 2.6 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 6.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLLEVKNLKIYYDTKGSDLKAVDDISFDIPEGENLGLVGESGCGKTTAAKSIIRLLPKN CCCEEEECEEEEEECCCCCCEEECCCEEECCCCCCCCEEECCCCCHHHHHHHHHHHCCCC GRIAGGSINYKGQNLAAMTTEEIRKTRWKEISMISQSAMSALNPVYKVGDQIVEAIRAHE CEEECCEECCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KMPKKEAMNRAEELFDIVGLEKKRLSAYPHQMSGGMKQRAIIAMALCLDPGLIIADEPTT CCCHHHHHHHHHHHHHHHCCCHHHHHCCCHHHCCCHHHHHHHHHHHHHCCCEEEECCCCH ALDVVVQDRILNKIVEIQKSHGSSMVFITHDISVVAETCERTCVMYAGKIMELGPTSKIF HHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHCHHHCCCCCHHHH KDPRHPYTMGLQNAFPSIQLDQKELISIPGFPPNLVEPPAGCMFYDRCPFCDEKCETEEP CCCCCCCEECHHHCCCCCEECHHHHHCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC ETVQVEKGHYVSCHYAEYYQQFRDRASQKTTWDEVKIRQQKKGVV CEEEEECCCEEEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC >Mature Secondary Structure SLLEVKNLKIYYDTKGSDLKAVDDISFDIPEGENLGLVGESGCGKTTAAKSIIRLLPKN CCEEEECEEEEEECCCCCCEEECCCEEECCCCCCCCEEECCCCCHHHHHHHHHHHCCCC GRIAGGSINYKGQNLAAMTTEEIRKTRWKEISMISQSAMSALNPVYKVGDQIVEAIRAHE CEEECCEECCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KMPKKEAMNRAEELFDIVGLEKKRLSAYPHQMSGGMKQRAIIAMALCLDPGLIIADEPTT CCCHHHHHHHHHHHHHHHCCCHHHHHCCCHHHCCCHHHHHHHHHHHHHCCCEEEECCCCH ALDVVVQDRILNKIVEIQKSHGSSMVFITHDISVVAETCERTCVMYAGKIMELGPTSKIF HHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHCHHHCCCCCHHHH KDPRHPYTMGLQNAFPSIQLDQKELISIPGFPPNLVEPPAGCMFYDRCPFCDEKCETEEP CCCCCCCEECHHHCCCCCEECHHHHHCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC ETVQVEKGHYVSCHYAEYYQQFRDRASQKTTWDEVKIRQQKKGVV CEEEEECCCEEEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; oligopeptides [Periplasm]; H2O [C]
Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 8796346; 9163424 [H]