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The map label for this gene is ycdX [C]

Identifier: 188586638

GI number: 188586638

Start: 2140949

End: 2141665

Strand: Reverse

Name: ycdX [C]

Synonym: Nther_2028

Alternate gene names: 188586638

Gene position: 2141665-2140949 (Counterclockwise)

Preceding gene: 188586639

Following gene: 188586637

Centisome position: 67.66

GC content: 41.42

Gene sequence:

>717_bases
ATGAAATTAGAGGCAGATCTTCATATTCATACCATAGCAAGCGGTCATGCTTACTCAACTGTTAAGGAAATAGCTGAGGC
AGCAAGTAGAAAAAGCCTAAAACTGATCGCACTGACAGACCACGGACCAGCTATGCCCGGTGGACCACATCTGTATCATT
TTGGAAATCTCAGGGTTCTTCCGGGGGAGCTACAAGGGGTTGAGATGCTACACGGAGTTGAAGCAAATATTATTGACCAT
GAAGGGAATTTAGATGTACCAGAAAGGTACTTACATCAACTTGACTGGATTGCTGCTGGTTTTCACCCTGTTTGCTATCC
TGGAGGTAACTTAGAGGAAAATACGAAGGCAATGATCAGGGCCCTTGAAAATCCTTTTGTCGATGTGGTAGTGCACCCGG
GAAACCCTCAGTTTAGAATAAATGAAGAAAAGATTGTTAAAGTTGCCAGAGATCTTGGAAAATTATTAGAACTCAATAAC
AGCAGTTTAACCATCTCCAGAGAAGGTAGCGAAGAAAACTGTGAATTAATATCATCATTAACAGCCCAATTTGGTGGCAG
AGTTGTGATTAATAGTGATGCCCATTTCGCAGAAGATGTAGGTTCGACTGCCAATGCATTAAAGATGGCTATGGATGCTG
GAGTGACTGAAGATCAAATTGTTAATTCTTCTGTTGCAAAAGTAAAAGAGTTTCTAGCGGAAAGAGGTCGTGAATAA

Upstream 100 bases:

>100_bases
ATAATATGTCGGAAATGGCTTGCAAAAATGTTGAAGCTGTTCTAGACGGACAGGAACCACCAACCCCCGTTGATTCGATA
GAACCTTGGAGGTGAAAAAC

Downstream 100 bases:

>100_bases
TGATAAGCCCTTAAGGGCTTATTTTTTTGTCATTGGCGCTCCAGTTTACTCGTTAAGATAATACAGCAGTGTCATTATCA
CATAGTTGGAGAAAATTGTC

Product: PHP domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 238; Mature: 238

Protein sequence:

>238_residues
MKLEADLHIHTIASGHAYSTVKEIAEAASRKSLKLIALTDHGPAMPGGPHLYHFGNLRVLPGELQGVEMLHGVEANIIDH
EGNLDVPERYLHQLDWIAAGFHPVCYPGGNLEENTKAMIRALENPFVDVVVHPGNPQFRINEEKIVKVARDLGKLLELNN
SSLTISREGSEENCELISSLTAQFGGRVVINSDAHFAEDVGSTANALKMAMDAGVTEDQIVNSSVAKVKEFLAERGRE

Sequences:

>Translated_238_residues
MKLEADLHIHTIASGHAYSTVKEIAEAASRKSLKLIALTDHGPAMPGGPHLYHFGNLRVLPGELQGVEMLHGVEANIIDH
EGNLDVPERYLHQLDWIAAGFHPVCYPGGNLEENTKAMIRALENPFVDVVVHPGNPQFRINEEKIVKVARDLGKLLELNN
SSLTISREGSEENCELISSLTAQFGGRVVINSDAHFAEDVGSTANALKMAMDAGVTEDQIVNSSVAKVKEFLAERGRE
>Mature_238_residues
MKLEADLHIHTIASGHAYSTVKEIAEAASRKSLKLIALTDHGPAMPGGPHLYHFGNLRVLPGELQGVEMLHGVEANIIDH
EGNLDVPERYLHQLDWIAAGFHPVCYPGGNLEENTKAMIRALENPFVDVVVHPGNPQFRINEEKIVKVARDLGKLLELNN
SSLTISREGSEENCELISSLTAQFGGRVVINSDAHFAEDVGSTANALKMAMDAGVTEDQIVNSSVAKVKEFLAERGRE

Specific function: Unknown

COG id: COG1387

COG function: function code ER; Histidinol phosphatase and related hydrolases of the PHP family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the PHP family [H]

Homologues:

Organism=Escherichia coli, GI1787271, Length=231, Percent_Identity=38.961038961039, Blast_Score=169, Evalue=1e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004013
- InterPro:   IPR003141
- InterPro:   IPR016195 [H]

Pfam domain/function: PF02811 PHP [H]

EC number: NA

Molecular weight: Translated: 25931; Mature: 25931

Theoretical pI: Translated: 5.32; Mature: 5.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLEADLHIHTIASGHAYSTVKEIAEAASRKSLKLIALTDHGPAMPGGPHLYHFGNLRVL
CCCCCCEEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCEEEEECCEEEE
PGELQGVEMLHGVEANIIDHEGNLDVPERYLHQLDWIAAGFHPVCYPGGNLEENTKAMIR
CCCCCCHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCEECCCCCCCHHHHHHHH
ALENPFVDVVVHPGNPQFRINEEKIVKVARDLGKLLELNNSSLTISREGSEENCELISSL
HHCCCCEEEEEECCCCCEEECHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHH
TAQFGGRVVINSDAHFAEDVGSTANALKMAMDAGVTEDQIVNSSVAKVKEFLAERGRE
HHHHCCEEEEECCCHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKLEADLHIHTIASGHAYSTVKEIAEAASRKSLKLIALTDHGPAMPGGPHLYHFGNLRVL
CCCCCCEEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCEEEEECCEEEE
PGELQGVEMLHGVEANIIDHEGNLDVPERYLHQLDWIAAGFHPVCYPGGNLEENTKAMIR
CCCCCCHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCEECCCCCCCHHHHHHHH
ALENPFVDVVVHPGNPQFRINEEKIVKVARDLGKLLELNNSSLTISREGSEENCELISSL
HHCCCCEEEEEECCCCCEEECHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHH
TAQFGGRVVINSDAHFAEDVGSTANALKMAMDAGVTEDQIVNSSVAKVKEFLAERGRE
HHHHCCEEEEECCCHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA