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The map label for this gene is yebC [C]

Identifier: 188586415

GI number: 188586415

Start: 1864267

End: 1865019

Strand: Reverse

Name: yebC [C]

Synonym: Nther_1800

Alternate gene names: 188586415

Gene position: 1865019-1864267 (Counterclockwise)

Preceding gene: 188586416

Following gene: 188586414

Centisome position: 58.92

GC content: 36.39

Gene sequence:

>753_bases
TTGGCAGGACATTCAAAGTGGGCAAATATTAAGCACAAAAAAGCCAGAGTAGACGAGAAGCGTGGCAAACTTTTTAGTAA
ACTTTCAAAAGAAATTATTGTTGCCGCGAAAGAGGGTGGAGGAGACCCTGAAAAGAACTTTCGTTTAAGAATGGCTGTTC
AAAAGGCAAAAGAAAATAATATGCCTAATGATAATATAGAGCGAGCAATTAAAAAGGGCACAGGAGAACTCAAAGGATTT
AATTATGAAGAGATATCCTATGAAGGTTACGGTCCAGGAGGAGTTGCTATATTCTTGGATGCCATGACAGATAATAAAAA
TAGAACAGCTTCTGAAGTACGTCATATTTTTACAAAGAATGATGGTAATCTGGGTGAAGATGGTTGTGTTGCTTGGATGT
TTGACCGTAAAGGTTTAATTACTATAGATAAAGAACAAGCTGAAAACATTGATGAAGAAGAACTGATGTTATTAACTGCG
GAAGCCGGGGCTGAAGACTTCAAATCCGATAATAACAGCATTGAAATCGTAACTACTCCACAAGATTTTGAACAAGTGAG
AGAAGCATTAGAAAACGAAGAAGTTCCGTTATCATATAAAGAAGTGACTATGATACCAAGCAATACTGTAAAAGTTGAAG
GTGAAGAAGCCAAGAAAGTCCTACAGCTAATGGAAGAGCTGGAAGATCATGATGATGTTCAAAATGTTTATGCTAACTTT
GACATTGATGATTCTTTAATGGAAACAGGTTAA

Upstream 100 bases:

>100_bases
ATCATTGAATTAAGTCTTGTAACATTGAATGATTGTTATTAGTAATTTTTATGCGAACATTATTTAGATTGTATTATCAA
ATTTAAAAGGGGGGATAATT

Downstream 100 bases:

>100_bases
GTGAGAATAATCCCCCCAGTATCTGGGAAGGATACCTTTTAGGTGTATCTCTTTTCAGATTGGGGGGAAATTTTTATGAA
CTTTAAAAAATCTCTTAAAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 249

Protein sequence:

>250_residues
MAGHSKWANIKHKKARVDEKRGKLFSKLSKEIIVAAKEGGGDPEKNFRLRMAVQKAKENNMPNDNIERAIKKGTGELKGF
NYEEISYEGYGPGGVAIFLDAMTDNKNRTASEVRHIFTKNDGNLGEDGCVAWMFDRKGLITIDKEQAENIDEEELMLLTA
EAGAEDFKSDNNSIEIVTTPQDFEQVREALENEEVPLSYKEVTMIPSNTVKVEGEEAKKVLQLMEELEDHDDVQNVYANF
DIDDSLMETG

Sequences:

>Translated_250_residues
MAGHSKWANIKHKKARVDEKRGKLFSKLSKEIIVAAKEGGGDPEKNFRLRMAVQKAKENNMPNDNIERAIKKGTGELKGF
NYEEISYEGYGPGGVAIFLDAMTDNKNRTASEVRHIFTKNDGNLGEDGCVAWMFDRKGLITIDKEQAENIDEEELMLLTA
EAGAEDFKSDNNSIEIVTTPQDFEQVREALENEEVPLSYKEVTMIPSNTVKVEGEEAKKVLQLMEELEDHDDVQNVYANF
DIDDSLMETG
>Mature_249_residues
AGHSKWANIKHKKARVDEKRGKLFSKLSKEIIVAAKEGGGDPEKNFRLRMAVQKAKENNMPNDNIERAIKKGTGELKGFN
YEEISYEGYGPGGVAIFLDAMTDNKNRTASEVRHIFTKNDGNLGEDGCVAWMFDRKGLITIDKEQAENIDEEELMLLTAE
AGAEDFKSDNNSIEIVTTPQDFEQVREALENEEVPLSYKEVTMIPSNTVKVEGEEAKKVLQLMEELEDHDDVQNVYANFD
IDDSLMETG

Specific function: Unknown

COG id: COG0217

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TACO1 family

Homologues:

Organism=Homo sapiens, GI27545315, Length=247, Percent_Identity=29.9595141700405, Blast_Score=129, Evalue=3e-30,
Organism=Escherichia coli, GI1788171, Length=250, Percent_Identity=48.8, Blast_Score=242, Evalue=2e-65,
Organism=Escherichia coli, GI1788294, Length=235, Percent_Identity=37.0212765957447, Blast_Score=140, Evalue=1e-34,
Organism=Caenorhabditis elegans, GI17556100, Length=248, Percent_Identity=25.4032258064516, Blast_Score=72, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6321458, Length=268, Percent_Identity=34.7014925373134, Blast_Score=125, Evalue=6e-30,
Organism=Drosophila melanogaster, GI24583305, Length=250, Percent_Identity=29.6, Blast_Score=84, Evalue=6e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1800_NATTJ (B2A5L8)

Other databases:

- EMBL:   CP001034
- RefSeq:   YP_001917960.1
- ProteinModelPortal:   B2A5L8
- SMR:   B2A5L8
- GeneID:   6316370
- GenomeReviews:   CP001034_GR
- KEGG:   nth:Nther_1800
- HOGENOM:   HBG715231
- OMA:   VYANFDI
- ProtClustDB:   PRK00110
- HAMAP:   MF_00693
- InterPro:   IPR002876
- InterPro:   IPR017856
- Gene3D:   G3DSA:1.10.10.200
- PANTHER:   PTHR12532
- TIGRFAMs:   TIGR01033

Pfam domain/function: PF01709 DUF28; SSF75625 DUF28

EC number: NA

Molecular weight: Translated: 28111; Mature: 27980

Theoretical pI: Translated: 4.43; Mature: 4.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGHSKWANIKHKKARVDEKRGKLFSKLSKEIIVAAKEGGGDPEKNFRLRMAVQKAKENN
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCHHHHHHHHHHHHCC
MPNDNIERAIKKGTGELKGFNYEEISYEGYGPGGVAIFLDAMTDNKNRTASEVRHIFTKN
CCCHHHHHHHHHCCCCCCCCCHHHEEECCCCCCCEEEEEEECCCCCCCHHHHHHHHHHCC
DGNLGEDGCVAWMFDRKGLITIDKEQAENIDEEELMLLTAEAGAEDFKSDNNSIEIVTTP
CCCCCCCCEEEEEECCCCEEEECHHHHHCCCCHHEEEEEECCCCHHHHCCCCCEEEEECC
QDFEQVREALENEEVPLSYKEVTMIPSNTVKVEGEEAKKVLQLMEELEDHDDVQNVYANF
HHHHHHHHHHCCCCCCCCHHEEEECCCCEEEECCHHHHHHHHHHHHHHCCHHHHHHHCCC
DIDDSLMETG
CCCHHHHCCC
>Mature Secondary Structure 
AGHSKWANIKHKKARVDEKRGKLFSKLSKEIIVAAKEGGGDPEKNFRLRMAVQKAKENN
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCHHHHHHHHHHHHCC
MPNDNIERAIKKGTGELKGFNYEEISYEGYGPGGVAIFLDAMTDNKNRTASEVRHIFTKN
CCCHHHHHHHHHCCCCCCCCCHHHEEECCCCCCCEEEEEEECCCCCCCHHHHHHHHHHCC
DGNLGEDGCVAWMFDRKGLITIDKEQAENIDEEELMLLTAEAGAEDFKSDNNSIEIVTTP
CCCCCCCCEEEEEECCCCEEEECHHHHHCCCCHHEEEEEECCCCHHHHCCCCCEEEEECC
QDFEQVREALENEEVPLSYKEVTMIPSNTVKVEGEEAKKVLQLMEELEDHDDVQNVYANF
HHHHHHHHHHCCCCCCCCHHEEEECCCCEEEECCHHHHHHHHHHHHHHCCHHHHHHHCCC
DIDDSLMETG
CCCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA