Click here to switch to the map view.

The map label for this gene is yqgF [C]

Identifier: 188586393

GI number: 188586393

Start: 1844941

End: 1845366

Strand: Reverse

Name: yqgF [C]

Synonym: Nther_1778

Alternate gene names: 188586393

Gene position: 1845366-1844941 (Counterclockwise)

Preceding gene: 188586394

Following gene: 188586392

Centisome position: 58.3

GC content: 36.15

Gene sequence:

>426_bases
ATGAGAATTATGGGTTTTGACCTTGGCGAAGCTACAATAGGAGTGGCGGTAAGTGATGCGTTACAACTAACTGCCCAAGG
GAAGACAGTTATCAAAAGACAATCTTTAGAAAAAGATATTGAACAAGTTACTAAGTTGATAGAAGACTATCAAGTGAGTA
AGTTGATAGTTGGACTACCCAAGAATATGAATGGGAGTTTGGGACAAATGGCTGATCAGATAATGGATTTTATTAAATCT
CTTGAACAAGAAGTTGACATCCCTATTGAAACCGTAGATGAAAGGTTAACTTCTCGCATGGCCGAGCAGACATTGTTAGA
AGCCGATGTTTCTAGAAAAAAGAGAAAACAAGTTATTGATAAACTGGCAGCCGTCAATATTTTGCAAACATACCTGGATA
GACAGGTAAATAAAAATAATAATTAA

Upstream 100 bases:

>100_bases
AGAATAATTCCCTTTCCTAATTTGGTTTTATGTGGTAAAGTTACATGTATAGATAATTTGGTATGCGGGTACAATATATT
TCGTAAATTAGGTGATATTC

Downstream 100 bases:

>100_bases
GAATTTAGGAGGGATCATTGTTGGCCAATGAAGATAACAATCAGGTGATTGTCTTGGAAGATGATAAAGGAGAGCGACAT
AATTTTGAGGTTTATGACTT

Product: Holliday junction resolvase YqgF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 141; Mature: 141

Protein sequence:

>141_residues
MRIMGFDLGEATIGVAVSDALQLTAQGKTVIKRQSLEKDIEQVTKLIEDYQVSKLIVGLPKNMNGSLGQMADQIMDFIKS
LEQEVDIPIETVDERLTSRMAEQTLLEADVSRKKRKQVIDKLAAVNILQTYLDRQVNKNNN

Sequences:

>Translated_141_residues
MRIMGFDLGEATIGVAVSDALQLTAQGKTVIKRQSLEKDIEQVTKLIEDYQVSKLIVGLPKNMNGSLGQMADQIMDFIKS
LEQEVDIPIETVDERLTSRMAEQTLLEADVSRKKRKQVIDKLAAVNILQTYLDRQVNKNNN
>Mature_141_residues
MRIMGFDLGEATIGVAVSDALQLTAQGKTVIKRQSLEKDIEQVTKLIEDYQVSKLIVGLPKNMNGSLGQMADQIMDFIKS
LEQEVDIPIETVDERLTSRMAEQTLLEADVSRKKRKQVIDKLAAVNILQTYLDRQVNKNNN

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family

Homologues:

Organism=Escherichia coli, GI1789318, Length=131, Percent_Identity=30.5343511450382, Blast_Score=72, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUVX_NATTJ (B2A5J5)

Other databases:

- EMBL:   CP001034
- RefSeq:   YP_001917938.1
- ProteinModelPortal:   B2A5J5
- SMR:   B2A5J5
- GeneID:   6316426
- GenomeReviews:   CP001034_GR
- KEGG:   nth:Nther_1778
- HOGENOM:   HBG607919
- OMA:   VLILQNY
- GO:   GO:0005737
- HAMAP:   MF_00651
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337
- Gene3D:   G3DSA:3.30.420.140
- SMART:   SM00732
- TIGRFAMs:   TIGR00250

Pfam domain/function: PF03652 UPF0081; SSF53098 RNaseH_fold

EC number: NA

Molecular weight: Translated: 15848; Mature: 15848

Theoretical pI: Translated: 4.99; Mature: 4.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIMGFDLGEATIGVAVSDALQLTAQGKTVIKRQSLEKDIEQVTKLIEDYQVSKLIVGLP
CCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
KNMNGSLGQMADQIMDFIKSLEQEVDIPIETVDERLTSRMAEQTLLEADVSRKKRKQVID
CCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KLAAVNILQTYLDRQVNKNNN
HHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MRIMGFDLGEATIGVAVSDALQLTAQGKTVIKRQSLEKDIEQVTKLIEDYQVSKLIVGLP
CCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
KNMNGSLGQMADQIMDFIKSLEQEVDIPIETVDERLTSRMAEQTLLEADVSRKKRKQVID
CCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KLAAVNILQTYLDRQVNKNNN
HHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA