Click here to switch to the map view.

The map label for this gene is cspLB [H]

Identifier: 188586205

GI number: 188586205

Start: 1666754

End: 1666954

Strand: Direct

Name: cspLB [H]

Synonym: Nther_1587

Alternate gene names: 188586205

Gene position: 1666754-1666954 (Clockwise)

Preceding gene: 188586203

Following gene: 188586210

Centisome position: 52.65

GC content: 37.81

Gene sequence:

>201_bases
ATGACTAAAGGTATTGTAAAGTGGTTTAACTCAGACAAAGGTTACGGATTTATCCAAGTAGAAGGTGAAGACGATGTATT
CGTTCACTTCTCAGCTATTCAAGAAGAAGGATTCAAAACTCTTGATGAAGGTCAACAGGTTGAATTTAACGTAGTTGAAG
GACAACGTGGACCTCAAGCTGCTGAAGTAGTTAAGTTATAG

Upstream 100 bases:

>100_bases
TTAGCGAAATTAATTGACAACCCTACCTATTAATGGTATGATTGTATCGTTGTCGGTAAGACAATATAATATTTTTTAAC
TTAATTGGAGGTTTTTTTAA

Downstream 100 bases:

>100_bases
ATTAAGATGACTTTTCTACATAAAAACTGCCCTGCATAGGGCAGTTTTTTTATTTTATGGAGCTGTTATATTTAGTAGTT
GAGAATGGGACTGCTATAAT

Product: cold-shock DNA-binding protein family

Products: NA

Alternate protein names: CspB [H]

Number of amino acids: Translated: 66; Mature: 65

Protein sequence:

>66_residues
MTKGIVKWFNSDKGYGFIQVEGEDDVFVHFSAIQEEGFKTLDEGQQVEFNVVEGQRGPQAAEVVKL

Sequences:

>Translated_66_residues
MTKGIVKWFNSDKGYGFIQVEGEDDVFVHFSAIQEEGFKTLDEGQQVEFNVVEGQRGPQAAEVVKL
>Mature_65_residues
TKGIVKWFNSDKGYGFIQVEGEDDVFVHFSAIQEEGFKTLDEGQQVEFNVVEGQRGPQAAEVVKL

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI2367114, Length=64, Percent_Identity=62.5, Blast_Score=86, Evalue=5e-19,
Organism=Escherichia coli, GI1786841, Length=65, Percent_Identity=64.6153846153846, Blast_Score=86, Evalue=6e-19,
Organism=Escherichia coli, GI1789979, Length=64, Percent_Identity=60.9375, Blast_Score=85, Evalue=8e-19,
Organism=Escherichia coli, GI1787839, Length=62, Percent_Identity=59.6774193548387, Blast_Score=82, Evalue=7e-18,
Organism=Escherichia coli, GI1788126, Length=65, Percent_Identity=61.5384615384615, Blast_Score=80, Evalue=3e-17,
Organism=Escherichia coli, GI1787834, Length=64, Percent_Identity=59.375, Blast_Score=78, Evalue=1e-16,
Organism=Escherichia coli, GI1787107, Length=67, Percent_Identity=49.2537313432836, Blast_Score=70, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7407; Mature: 7276

Theoretical pI: Translated: 4.21; Mature: 4.21

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKGIVKWFNSDKGYGFIQVEGEDDVFVHFSAIQEEGFKTLDEGQQVEFNVVEGQRGPQA
CCCCCEEECCCCCCCEEEEEECCCCEEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCC
AEVVKL
EEEECC
>Mature Secondary Structure 
TKGIVKWFNSDKGYGFIQVEGEDDVFVHFSAIQEEGFKTLDEGQQVEFNVVEGQRGPQA
CCCCEEECCCCCCCEEEEEECCCCEEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCC
AEVVKL
EEEECC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11679669 [H]