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The map label for this gene is 188586172

Identifier: 188586172

GI number: 188586172

Start: 1635245

End: 1635847

Strand: Reverse

Name: 188586172

Synonym: Nther_1552

Alternate gene names: NA

Gene position: 1635847-1635245 (Counterclockwise)

Preceding gene: 188586173

Following gene: 188586171

Centisome position: 51.68

GC content: 33.17

Gene sequence:

>603_bases
ATGAATGATATAACAAATAAGTACAAAGCGGTTGTTCGTGATAGACATGGTACGTTAGTAATAATATTTGTAAACCTATT
GTTTTATATAGTTTTAAATACAATTCCTAATCTCGGTGATAAATTATTACTGTATCCTGAAATAAATATGGTCATAGAAA
GACCTTGGACCTTAATCACTGTATTTTTCTCCCACGAAATTCATATTCACATTCTTGGAAACATGGGGCTATTTTTCTTT
TTTGGTTCTAAATTAGAAAAAGTTACTAACTCAAAAGTTGTTATTTTAGTATACTTAATTACTGGATTCATAGGTAGTTT
AGCAATTTTACCTGTTGCTTATCTTATAGAGTGGACTGAGACGGTAGTTGGTGCATCAGCAGCCGTTTTTGGGATAGTTT
CAGCATTTGCAGTGTTGCGGCCTAGCACTATAATTTTACGCTCAAAGGCTAAATGGTGGGCATTAGCATTGTTTGTTTTT
AATGCAATTATAGCAATTATAAACCCTCAAATTTCTGTTGGTGCTGGTGCTCATGCTGTTGGAATTATCGTGGGGCTAAT
TATTGGCTATTGGCTTAAAAACAAAAAAACTAATCTGAACTAG

Upstream 100 bases:

>100_bases
GGTTAGCCGTGGTATTACTAGCGAAGGAGAATATGAAATCACGGTTGATACCCTGTTTTAAACAACTCTAAAACAATTTT
TGTTAAAGAAGGGATTCTAA

Downstream 100 bases:

>100_bases
TAAATATAAAGTTATTTAAATTGCACAAATATGATATATTAAAAGGATATTGGTTAGTAACCTAGAAATTTTTATGGTAA
AATCTTTAAACGCGATTAAT

Product: Rhomboid family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 200; Mature: 200

Protein sequence:

>200_residues
MNDITNKYKAVVRDRHGTLVIIFVNLLFYIVLNTIPNLGDKLLLYPEINMVIERPWTLITVFFSHEIHIHILGNMGLFFF
FGSKLEKVTNSKVVILVYLITGFIGSLAILPVAYLIEWTETVVGASAAVFGIVSAFAVLRPSTIILRSKAKWWALALFVF
NAIIAIINPQISVGAGAHAVGIIVGLIIGYWLKNKKTNLN

Sequences:

>Translated_200_residues
MNDITNKYKAVVRDRHGTLVIIFVNLLFYIVLNTIPNLGDKLLLYPEINMVIERPWTLITVFFSHEIHIHILGNMGLFFF
FGSKLEKVTNSKVVILVYLITGFIGSLAILPVAYLIEWTETVVGASAAVFGIVSAFAVLRPSTIILRSKAKWWALALFVF
NAIIAIINPQISVGAGAHAVGIIVGLIIGYWLKNKKTNLN
>Mature_200_residues
MNDITNKYKAVVRDRHGTLVIIFVNLLFYIVLNTIPNLGDKLLLYPEINMVIERPWTLITVFFSHEIHIHILGNMGLFFF
FGSKLEKVTNSKVVILVYLITGFIGSLAILPVAYLIEWTETVVGASAAVFGIVSAFAVLRPSTIILRSKAKWWALALFVF
NAIIAIINPQISVGAGAHAVGIIVGLIIGYWLKNKKTNLN

Specific function: Unknown

COG id: COG0705

COG function: function code R; Uncharacterized membrane protein (homolog of Drosophila rhomboid)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22224; Mature: 22224

Theoretical pI: Translated: 10.26; Mature: 10.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDITNKYKAVVRDRHGTLVIIFVNLLFYIVLNTIPNLGDKLLLYPEINMVIERPWTLIT
CCCHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHCCCCCCCEEEEECCCEEEECCCEEEE
VFFSHEIHIHILGNMGLFFFFGSKLEKVTNSKVVILVYLITGFIGSLAILPVAYLIEWTE
EEEECEEEEEEEECCCEEEHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHH
TVVGASAAVFGIVSAFAVLRPSTIILRSKAKWWALALFVFNAIIAIINPQISVGAGAHAV
HHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCEECCCCHHHH
GIIVGLIIGYWLKNKKTNLN
HHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MNDITNKYKAVVRDRHGTLVIIFVNLLFYIVLNTIPNLGDKLLLYPEINMVIERPWTLIT
CCCHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHCCCCCCCEEEEECCCEEEECCCEEEE
VFFSHEIHIHILGNMGLFFFFGSKLEKVTNSKVVILVYLITGFIGSLAILPVAYLIEWTE
EEEECEEEEEEEECCCEEEHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHH
TVVGASAAVFGIVSAFAVLRPSTIILRSKAKWWALALFVFNAIIAIINPQISVGAGAHAV
HHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCEECCCCHHHH
GIIVGLIIGYWLKNKKTNLN
HHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA