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The map label for this gene is ymdB [C]

Identifier: 188585872

GI number: 188585872

Start: 1315627

End: 1316157

Strand: Direct

Name: ymdB [C]

Synonym: Nther_1246

Alternate gene names: 188585872

Gene position: 1315627-1316157 (Clockwise)

Preceding gene: 188585871

Following gene: 188585873

Centisome position: 41.56

GC content: 36.53

Gene sequence:

>531_bases
ATGGAGAAGAAGATTGGCGGTGTTACTCTAAAAATCACTAAAGGTGATATTGCCAATCAAAATGATGTGCAAGCTATAGT
TAATGCAGCCAATAGAGAGTTGCGAACTGGTGGTGGAGTAGCAGGAGCTATCCATCGAGGTGCTGGTCCGGAATTAGAAC
AGGAATGCCGACAATATGCTCCAATTACACCGGGTGAAGCAGTTATAACAGGAGCTCATAATTTACCTAATGATTATGTA
ATCCACTGTTTGGGGCCAGTATATGGTGTTGATAAGCCACATGATGAATTATTGATTAAATGTTATAAAAATGTTTTAAA
GAAAGCCGATGAACATGAGATTAGATCCGTAGCATTCCCTGCAATATCTACTGGAGCATTTGGATATCCCATTGAAGAAG
CTACCGAAATTGCCTTAGATACTGTTAAAGCGCAGGCAGATAAACTTAAAAATATTGAATTAATAAAATTTGTATTATTT
GACGATAACAGTTTTAAAACTTATCAAGAAAAAACAAAGGAAATAGTCTGA

Upstream 100 bases:

>100_bases
TCTACAAAGATGCGGTTTTTATTTTACTTAGAAGGATATTTTGCCGTTAAAATCAAATAATTATAAATGGAATTAGTTTA
AAATTGGAGGTGGTGTAAAT

Downstream 100 bases:

>100_bases
ATTTTTTTAGTTTAATCATAAAAGGTTGTAGGGTCATTCCATTTGTTATAAAATGAACATAGGGTATGAGGGGTATTTTT
ATGTTATAATATCTAGGACA

Product: Appr-1-p processing domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 176; Mature: 176

Protein sequence:

>176_residues
MEKKIGGVTLKITKGDIANQNDVQAIVNAANRELRTGGGVAGAIHRGAGPELEQECRQYAPITPGEAVITGAHNLPNDYV
IHCLGPVYGVDKPHDELLIKCYKNVLKKADEHEIRSVAFPAISTGAFGYPIEEATEIALDTVKAQADKLKNIELIKFVLF
DDNSFKTYQEKTKEIV

Sequences:

>Translated_176_residues
MEKKIGGVTLKITKGDIANQNDVQAIVNAANRELRTGGGVAGAIHRGAGPELEQECRQYAPITPGEAVITGAHNLPNDYV
IHCLGPVYGVDKPHDELLIKCYKNVLKKADEHEIRSVAFPAISTGAFGYPIEEATEIALDTVKAQADKLKNIELIKFVLF
DDNSFKTYQEKTKEIV
>Mature_176_residues
MEKKIGGVTLKITKGDIANQNDVQAIVNAANRELRTGGGVAGAIHRGAGPELEQECRQYAPITPGEAVITGAHNLPNDYV
IHCLGPVYGVDKPHDELLIKCYKNVLKKADEHEIRSVAFPAISTGAFGYPIEEATEIALDTVKAQADKLKNIELIKFVLF
DDNSFKTYQEKTKEIV

Specific function: Unknown

COG id: COG2110

COG function: function code R; Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain [H]

Homologues:

Organism=Homo sapiens, GI117968621, Length=169, Percent_Identity=45.5621301775148, Blast_Score=127, Evalue=4e-30,
Organism=Homo sapiens, GI13569840, Length=164, Percent_Identity=43.2926829268293, Blast_Score=123, Evalue=9e-29,
Organism=Homo sapiens, GI154813199, Length=169, Percent_Identity=35.5029585798817, Blast_Score=96, Evalue=1e-20,
Organism=Homo sapiens, GI20336746, Length=174, Percent_Identity=33.3333333333333, Blast_Score=96, Evalue=1e-20,
Organism=Homo sapiens, GI93141018, Length=176, Percent_Identity=31.25, Blast_Score=89, Evalue=1e-18,
Organism=Homo sapiens, GI93141020, Length=176, Percent_Identity=31.25, Blast_Score=89, Evalue=2e-18,
Organism=Homo sapiens, GI4758496, Length=176, Percent_Identity=31.25, Blast_Score=89, Evalue=2e-18,
Organism=Homo sapiens, GI207450721, Length=134, Percent_Identity=38.0597014925373, Blast_Score=89, Evalue=3e-18,
Organism=Homo sapiens, GI8923143, Length=134, Percent_Identity=38.0597014925373, Blast_Score=88, Evalue=3e-18,
Organism=Homo sapiens, GI226371710, Length=182, Percent_Identity=28.021978021978, Blast_Score=78, Evalue=4e-15,
Organism=Homo sapiens, GI226371706, Length=182, Percent_Identity=28.021978021978, Blast_Score=78, Evalue=4e-15,
Organism=Homo sapiens, GI226371718, Length=182, Percent_Identity=28.021978021978, Blast_Score=78, Evalue=4e-15,
Organism=Homo sapiens, GI226371716, Length=182, Percent_Identity=28.021978021978, Blast_Score=78, Evalue=5e-15,
Organism=Homo sapiens, GI226371714, Length=182, Percent_Identity=28.021978021978, Blast_Score=78, Evalue=5e-15,
Organism=Homo sapiens, GI226371712, Length=182, Percent_Identity=28.021978021978, Blast_Score=78, Evalue=5e-15,
Organism=Homo sapiens, GI8923920, Length=179, Percent_Identity=29.608938547486, Blast_Score=74, Evalue=7e-14,
Organism=Escherichia coli, GI1787283, Length=166, Percent_Identity=42.1686746987952, Blast_Score=112, Evalue=1e-26,
Organism=Caenorhabditis elegans, GI17538214, Length=157, Percent_Identity=42.6751592356688, Blast_Score=106, Evalue=5e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002589
- InterPro:   IPR022942 [H]

Pfam domain/function: PF01661 Macro [H]

EC number: NA

Molecular weight: Translated: 19216; Mature: 19216

Theoretical pI: Translated: 6.02; Mature: 6.02

Prosite motif: PS51154 MACRO

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKKIGGVTLKITKGDIANQNDVQAIVNAANRELRTGGGVAGAIHRGAGPELEQECRQYA
CCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEHHHCCCCCCHHHHHHHCC
PITPGEAVITGAHNLPNDYVIHCLGPVYGVDKPHDELLIKCYKNVLKKADEHEIRSVAFP
CCCCCCEEEECCCCCCCCCEEEECCHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCC
AISTGAFGYPIEEATEIALDTVKAQADKLKNIELIKFVLFDDNSFKTYQEKTKEIV
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEEEEECCCCCHHHHHHHHCCC
>Mature Secondary Structure
MEKKIGGVTLKITKGDIANQNDVQAIVNAANRELRTGGGVAGAIHRGAGPELEQECRQYA
CCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEHHHCCCCCCHHHHHHHCC
PITPGEAVITGAHNLPNDYVIHCLGPVYGVDKPHDELLIKCYKNVLKKADEHEIRSVAFP
CCCCCCEEEECCCCCCCCCEEEECCHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCC
AISTGAFGYPIEEATEIALDTVKAQADKLKNIELIKFVLFDDNSFKTYQEKTKEIV
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEEEEECCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12093901 [H]