Click here to switch to the map view.

The map label for this gene is ybgI [C]

Identifier: 188585843

GI number: 188585843

Start: 1290719

End: 1291840

Strand: Direct

Name: ybgI [C]

Synonym: Nther_1217

Alternate gene names: 188585843

Gene position: 1290719-1291840 (Clockwise)

Preceding gene: 188585842

Following gene: 188585844

Centisome position: 40.77

GC content: 35.74

Gene sequence:

>1122_bases
ATGACAACACGACCAGCTAAAAAGACCTTGATTAATCTTTTAGAAAAATTTGCTCCAAAATACTTAGCTGTTGAAGGGGA
TAATCCTGGATTACAGCTTGGAAGTGTTAATGATAAAGTTTCTAAGTGTTTAGTAGCCCTTGATCCATCAAAACAAGTCA
TTGAACAGGCAATAAAAATGAAAGCGGAGTTAATTATTACACATCATCCTTTATTCATGCCCCCCTTACATGTAGTTACT
GATGAAAAAATAGGAGATGTAACAAAAAGGGCCATTAAAAATGACATATCCATTTATACAAGTCATACAAATTTGGATGC
TGCTCTTGAAATTGGAGTTAATCATGCACTTCTTGAAACACTAAATATCAACTTAATTGACGAAAGGCCTTTGACTACAA
CATATAAAGAAAAATATTCAAAAATAGTTGTTTTTATGCCTCAAGGGTATGAAGATGAAGTGAGAACGGCATTGAGTAGT
GCAGGTGCTGGCTCTTTAGGGCATTATTGTGACGTTAGTTTCCAATCTCAAGGTATAGGCACTTTTAAACCCCTGGCTGG
AACTGATCCCTTTATCGGAGAGCAGGGAAGAATTTCTCGCACTGAAGAGGTTAAGCTTGAAACCATTGTTCCTAATTCCA
AAATTAATCAAGTAATTCAAGAAATGAGAGCTGTTCATCCTTACGAAGAGCCTGCATATGATATTTATCAACTGGAATAT
CCTGACAAAAAATATGGAATCGGATTGGTAGGAGAGTTAAGTTCACCCATTAGAAGTGAGACTTTGATTGAAACAATTGA
ACAAAGATTACATACCCAAGTGAGACTTGCCGGGCCAAGGCCCGAAAATATAAATAGTGTGGCAGTTTGTGGAGGAAGTG
GAGGTAAAATGGTTGAAAAAGCCTTAAAACTAGGAGTAGATGCTTTTATTACAGGAGATATAAAATATCACGATGCTCTG
AGAGCTGAACAAGAAGGACTTTTTCTAATTGATGCAGGTCATAGAGAAACAGAATTACCTGTTGTAGACAAAGTTACAAA
GTTTTTAGATGAACAGTTAAGTGATGATTACAACCTAGAAATAAAATCTTTTCATAATGACGAATATGTGTTTTACAGGT
AG

Upstream 100 bases:

>100_bases
GTAATAGATGAACTTCAACAAGCTAAAACTGAGAGGGCAAGAGCAAAACTGCAGGAAATGAGAACTAGAGCCGATGCTAT
TTCGGAGGTGTTAAATAATC

Downstream 100 bases:

>100_bases
AGTGACAGGATACTGTTATCTCTACCTGTTTTTTATTAATTATCTATTTTAATATAAGGGCTGTTATATTGAGTTGTTAA
TACTGTAAAATTATCAATTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 373; Mature: 372

Protein sequence:

>373_residues
MTTRPAKKTLINLLEKFAPKYLAVEGDNPGLQLGSVNDKVSKCLVALDPSKQVIEQAIKMKAELIITHHPLFMPPLHVVT
DEKIGDVTKRAIKNDISIYTSHTNLDAALEIGVNHALLETLNINLIDERPLTTTYKEKYSKIVVFMPQGYEDEVRTALSS
AGAGSLGHYCDVSFQSQGIGTFKPLAGTDPFIGEQGRISRTEEVKLETIVPNSKINQVIQEMRAVHPYEEPAYDIYQLEY
PDKKYGIGLVGELSSPIRSETLIETIEQRLHTQVRLAGPRPENINSVAVCGGSGGKMVEKALKLGVDAFITGDIKYHDAL
RAEQEGLFLIDAGHRETELPVVDKVTKFLDEQLSDDYNLEIKSFHNDEYVFYR

Sequences:

>Translated_373_residues
MTTRPAKKTLINLLEKFAPKYLAVEGDNPGLQLGSVNDKVSKCLVALDPSKQVIEQAIKMKAELIITHHPLFMPPLHVVT
DEKIGDVTKRAIKNDISIYTSHTNLDAALEIGVNHALLETLNINLIDERPLTTTYKEKYSKIVVFMPQGYEDEVRTALSS
AGAGSLGHYCDVSFQSQGIGTFKPLAGTDPFIGEQGRISRTEEVKLETIVPNSKINQVIQEMRAVHPYEEPAYDIYQLEY
PDKKYGIGLVGELSSPIRSETLIETIEQRLHTQVRLAGPRPENINSVAVCGGSGGKMVEKALKLGVDAFITGDIKYHDAL
RAEQEGLFLIDAGHRETELPVVDKVTKFLDEQLSDDYNLEIKSFHNDEYVFYR
>Mature_372_residues
TTRPAKKTLINLLEKFAPKYLAVEGDNPGLQLGSVNDKVSKCLVALDPSKQVIEQAIKMKAELIITHHPLFMPPLHVVTD
EKIGDVTKRAIKNDISIYTSHTNLDAALEIGVNHALLETLNINLIDERPLTTTYKEKYSKIVVFMPQGYEDEVRTALSSA
GAGSLGHYCDVSFQSQGIGTFKPLAGTDPFIGEQGRISRTEEVKLETIVPNSKINQVIQEMRAVHPYEEPAYDIYQLEYP
DKKYGIGLVGELSSPIRSETLIETIEQRLHTQVRLAGPRPENINSVAVCGGSGGKMVEKALKLGVDAFITGDIKYHDALR
AEQEGLFLIDAGHRETELPVVDKVTKFLDEQLSDDYNLEIKSFHNDEYVFYR

Specific function: Unknown

COG id: COG3323

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0135 (NIF3) family [H]

Homologues:

Organism=Escherichia coli, GI1786928, Length=107, Percent_Identity=34.5794392523364, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002678
- InterPro:   IPR017221 [H]

Pfam domain/function: PF01784 NIF3 [H]

EC number: NA

Molecular weight: Translated: 41568; Mature: 41437

Theoretical pI: Translated: 5.31; Mature: 5.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTRPAKKTLINLLEKFAPKYLAVEGDNPGLQLGSVNDKVSKCLVALDPSKQVIEQAIKM
CCCCHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCHHHHHEEEEECCCHHHHHHHHHH
KAELIITHHPLFMPPLHVVTDEKIGDVTKRAIKNDISIYTSHTNLDAALEIGVNHALLET
HEEEEEEECCCCCCCCCEECCCHHHHHHHHHHHCCCEEEEECCCCCEEEEECCCHHHHHH
LNINLIDERPLTTTYKEKYSKIVVFMPQGYEDEVRTALSSAGAGSLGHYCDVSFQSQGIG
CCEEEECCCCCCHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEECEECCCCCC
TFKPLAGTDPFIGEQGRISRTEEVKLETIVPNSKINQVIQEMRAVHPYEEPAYDIYQLEY
CCCCCCCCCCCCCCCCCCCCCHHEEEEEECCCHHHHHHHHHHHHCCCCCCCCCEEEEEEC
PDKKYGIGLVGELSSPIRSETLIETIEQRLHTQVRLAGPRPENINSVAVCGGSGGKMVEK
CCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCEEEECCCCCCCCCEEEEECCCCHHHHHH
ALKLGVDAFITGDIKYHDALRAEQEGLFLIDAGHRETELPVVDKVTKFLDEQLSDDYNLE
HHHCCCCEEEECCEEHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCEE
IKSFHNDEYVFYR
EEEECCCCEEEEC
>Mature Secondary Structure 
TTRPAKKTLINLLEKFAPKYLAVEGDNPGLQLGSVNDKVSKCLVALDPSKQVIEQAIKM
CCCHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCHHHHHEEEEECCCHHHHHHHHHH
KAELIITHHPLFMPPLHVVTDEKIGDVTKRAIKNDISIYTSHTNLDAALEIGVNHALLET
HEEEEEEECCCCCCCCCEECCCHHHHHHHHHHHCCCEEEEECCCCCEEEEECCCHHHHHH
LNINLIDERPLTTTYKEKYSKIVVFMPQGYEDEVRTALSSAGAGSLGHYCDVSFQSQGIG
CCEEEECCCCCCHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEECEECCCCCC
TFKPLAGTDPFIGEQGRISRTEEVKLETIVPNSKINQVIQEMRAVHPYEEPAYDIYQLEY
CCCCCCCCCCCCCCCCCCCCCHHEEEEEECCCHHHHHHHHHHHHCCCCCCCCCEEEEEEC
PDKKYGIGLVGELSSPIRSETLIETIEQRLHTQVRLAGPRPENINSVAVCGGSGGKMVEK
CCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCEEEECCCCCCCCCEEEEECCCCHHHHHH
ALKLGVDAFITGDIKYHDALRAEQEGLFLIDAGHRETELPVVDKVTKFLDEQLSDDYNLE
HHHCCCCEEEECCEEHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCEE
IKSFHNDEYVFYR
EEEECCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]