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The map label for this gene is ccpN [H]

Identifier: 188585835

GI number: 188585835

Start: 1279366

End: 1280001

Strand: Direct

Name: ccpN [H]

Synonym: Nther_1209

Alternate gene names: 188585835

Gene position: 1279366-1280001 (Clockwise)

Preceding gene: 188585834

Following gene: 188585836

Centisome position: 40.42

GC content: 37.42

Gene sequence:

>636_bases
ATGAACATCCGGCTATCTAAAAGACAAAATGAAATAGTAAAAATAGTACGTGAAAAGGGTCCTATCAGTGGTGAAGAGAT
CGCATCTTATCTGAATTTAGCTCGGGCCACTTTAAGGCCGGATTTAAGTTTCCTTACCATGTCGGGTTTGTTAGAAGCAA
GGCCTAAAGTAGGGTATTATTATACTGGTAAAAGTATCGAAAATGCCCTTGGGGACATATTAAAACAAAATAAAGTTAGT
GACATTAAGGGACTACCTGTAGCGGTATCTGAGGAAACTAGTGTTTATGATGCTATTGTAACACTGTTTTTAGAAGATGT
GGGAACAATATTTGTGGTTGATGAAAATAACTATCTCAAAGGAGTAGCTTCAAGGAAAGATTTTCTTAAGATTACCCTGG
GAGATAATGATTTGGGAAAAATGCCTGTAGGTATTGTTATGACACGCTGGCCCAATATAGTTACTTTGCGGGATGAAGAT
ACAGCTTTGAGTGCTGCCAAAAAAGTTGAAGAATTTCAGGTGGATTGTATACCCGTAATCAGTGATGACAATGTAGAAGA
ACAGGCCGAGCTTACTGGTAGAGTTAGTAAAACTCATTTGGTTAAATTATTAGCTGAAATTGATGAACAGAGGTGA

Upstream 100 bases:

>100_bases
TTTTTTTAAAATTAGCAGGAAAAATTAAATATAAATAGTATATAATATATTGGCGTTTATTTTGATATAGTATAACATAT
TTAAGAAAAATTAGGTGGTG

Downstream 100 bases:

>100_bases
AAAATGAGTTATATTATTAGTTTATAAAAGAATATATTTATTTCTAGAGAGGAGGTACATTTTTGACTGAACAAAAGCTA
ACTCCTATCTGTTATGTGGT

Product: CBS domain containing protein

Products: NA

Alternate protein names: Catabolite control protein N; Control catabolite protein of gluconeogenesis [H]

Number of amino acids: Translated: 211; Mature: 211

Protein sequence:

>211_residues
MNIRLSKRQNEIVKIVREKGPISGEEIASYLNLARATLRPDLSFLTMSGLLEARPKVGYYYTGKSIENALGDILKQNKVS
DIKGLPVAVSEETSVYDAIVTLFLEDVGTIFVVDENNYLKGVASRKDFLKITLGDNDLGKMPVGIVMTRWPNIVTLRDED
TALSAAKKVEEFQVDCIPVISDDNVEEQAELTGRVSKTHLVKLLAEIDEQR

Sequences:

>Translated_211_residues
MNIRLSKRQNEIVKIVREKGPISGEEIASYLNLARATLRPDLSFLTMSGLLEARPKVGYYYTGKSIENALGDILKQNKVS
DIKGLPVAVSEETSVYDAIVTLFLEDVGTIFVVDENNYLKGVASRKDFLKITLGDNDLGKMPVGIVMTRWPNIVTLRDED
TALSAAKKVEEFQVDCIPVISDDNVEEQAELTGRVSKTHLVKLLAEIDEQR
>Mature_211_residues
MNIRLSKRQNEIVKIVREKGPISGEEIASYLNLARATLRPDLSFLTMSGLLEARPKVGYYYTGKSIENALGDILKQNKVS
DIKGLPVAVSEETSVYDAIVTLFLEDVGTIFVVDENNYLKGVASRKDFLKITLGDNDLGKMPVGIVMTRWPNIVTLRDED
TALSAAKKVEEFQVDCIPVISDDNVEEQAELTGRVSKTHLVKLLAEIDEQR

Specific function: Transcription repressor that binds to the promoter of gapB and pckA genes, preventing their expression. Acts as a regulator for catabolite repression of gluconeogenic genes [H]

COG id: COG0517

COG function: function code R; FOG: CBS domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000644
- InterPro:   IPR013196
- InterPro:   IPR001034
- InterPro:   IPR016842
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00571 CBS; PF08279 HTH_11 [H]

EC number: NA

Molecular weight: Translated: 23471; Mature: 23471

Theoretical pI: Translated: 4.77; Mature: 4.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIRLSKRQNEIVKIVREKGPISGEEIASYLNLARATLRPDLSFLTMSGLLEARPKVGYY
CCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEE
YTGKSIENALGDILKQNKVSDIKGLPVAVSEETSVYDAIVTLFLEDVGTIFVVDENNYLK
ECCCHHHHHHHHHHHHCCCCCCCCCCEEECCCHHHHHHHHHHHHHCCCEEEEEECCCCCH
GVASRKDFLKITLGDNDLGKMPVGIVMTRWPNIVTLRDEDTALSAAKKVEEFQVDCIPVI
HCCCCCCEEEEEECCCCCCCCCCEEEEECCCCEEEECCCHHHHHHHHHHHHHCCEEEEEE
SDDNVEEQAELTGRVSKTHLVKLLAEIDEQR
CCCCHHHHHHHHHCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNIRLSKRQNEIVKIVREKGPISGEEIASYLNLARATLRPDLSFLTMSGLLEARPKVGYY
CCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEE
YTGKSIENALGDILKQNKVSDIKGLPVAVSEETSVYDAIVTLFLEDVGTIFVVDENNYLK
ECCCHHHHHHHHHHHHCCCCCCCCCCEEECCCHHHHHHHHHHHHHCCCEEEEEECCCCCH
GVASRKDFLKITLGDNDLGKMPVGIVMTRWPNIVTLRDEDTALSAAKKVEEFQVDCIPVI
HCCCCCCEEEEEECCCCCCCCCCEEEEECCCCEEEECCCHHHHHHHHHHHHHCCEEEEEE
SDDNVEEQAELTGRVSKTHLVKLLAEIDEQR
CCCCHHHHHHHHHCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]