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The map label for this gene is xerC [H]

Identifier: 188585737

GI number: 188585737

Start: 1177125

End: 1177694

Strand: Reverse

Name: xerC [H]

Synonym: Nther_1111

Alternate gene names: 188585737

Gene position: 1177694-1177125 (Counterclockwise)

Preceding gene: 188585743

Following gene: 188585725

Centisome position: 37.2

GC content: 34.04

Gene sequence:

>570_bases
ATGCCCCAAACTGTACCTGTTGCTTTAAATCGAGAAGAACAAAATTCCTTGTTAAGAGTTCCAGAACGAAATACTGTTAT
GGGACTTAGAGATCTCATTATTATGAACTTAATCCTAAATTACGGATTAAGACTTTATGAATTGCGATCATTGAGGTGGG
ATAATTTAGACCTTCATGCCAATATGATATATATACCTAAGAGTAAAGGATCTTTTGGTAGGAAACTGCAATTACGTTTG
GCCGATTATAAACTGTTAAATACATGGAAGGACACGCAAAATCAGTACTTTTCAACTTCTTATGTGATCACTACTCTATC
GGGAAATGTCATTAGTGGATCTTATATTGAATCAATTTTACAAAGATATTCACAAAAAGCAGGTATTTCCAAGCGTCTGA
CTCCCCATATTCTAAGGCATGTGTTTGCAGTAGACTCCTATAAAAAGACTGGAGACTTAGATAAAGTTCAAGAACTTCTC
GGTCATCGCTTTCGTTCAACTACTGAAGAATATTTAAAAATCGTGGATACAAGAGTTTCACCTTCAAAATTAAAATGGCT
AAAAATTTAA

Upstream 100 bases:

>100_bases
CTTTCCCCGGATGGCCACCTTTACTTTATTATTACGTGATCCAAGAGGGACTTTCCTGCCCTTCTATAAATAACTATAAC
AGACGAGGTGGTGGATATTC

Downstream 100 bases:

>100_bases
GCAAGTATATCTGTCTTCAAATATCGCCGAGCTTCTACTACTAAGTAAAAAGAACCAAAGATCACTAACAAACTTCCGTT
GCCAGCTTTTGAGATTCCCA

Product: integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 189; Mature: 188

Protein sequence:

>189_residues
MPQTVPVALNREEQNSLLRVPERNTVMGLRDLIIMNLILNYGLRLYELRSLRWDNLDLHANMIYIPKSKGSFGRKLQLRL
ADYKLLNTWKDTQNQYFSTSYVITTLSGNVISGSYIESILQRYSQKAGISKRLTPHILRHVFAVDSYKKTGDLDKVQELL
GHRFRSTTEEYLKIVDTRVSPSKLKWLKI

Sequences:

>Translated_189_residues
MPQTVPVALNREEQNSLLRVPERNTVMGLRDLIIMNLILNYGLRLYELRSLRWDNLDLHANMIYIPKSKGSFGRKLQLRL
ADYKLLNTWKDTQNQYFSTSYVITTLSGNVISGSYIESILQRYSQKAGISKRLTPHILRHVFAVDSYKKTGDLDKVQELL
GHRFRSTTEEYLKIVDTRVSPSKLKWLKI
>Mature_188_residues
PQTVPVALNREEQNSLLRVPERNTVMGLRDLIIMNLILNYGLRLYELRSLRWDNLDLHANMIYIPKSKGSFGRKLQLRLA
DYKLLNTWKDTQNQYFSTSYVITTLSGNVISGSYIESILQRYSQKAGISKRLTPHILRHVFAVDSYKKTGDLDKVQELLG
HRFRSTTEEYLKIVDTRVSPSKLKWLKI

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4973

COG function: function code L; Site-specific recombinase XerC

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790244, Length=171, Percent_Identity=30.4093567251462, Blast_Score=77, Evalue=9e-16,
Organism=Escherichia coli, GI1789261, Length=184, Percent_Identity=27.7173913043478, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011931 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 22031; Mature: 21900

Theoretical pI: Translated: 10.42; Mature: 10.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPQTVPVALNREEQNSLLRVPERNTVMGLRDLIIMNLILNYGLRLYELRSLRWDNLDLHA
CCCCCCEEECCCCCCCEEECCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCEEEE
NMIYIPKSKGSFGRKLQLRLADYKLLNTWKDTQNQYFSTSYVITTLSGNVISGSYIESIL
EEEEEECCCCCCCCEEEEEEHHHHHHHHHHHHHCCEEEHEEEEEEECCCCCCCHHHHHHH
QRYSQKAGISKRLTPHILRHVFAVDSYKKTGDLDKVQELLGHRFRSTTEEYLKIVDTRVS
HHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCC
PSKLKWLKI
CCCEEEECC
>Mature Secondary Structure 
PQTVPVALNREEQNSLLRVPERNTVMGLRDLIIMNLILNYGLRLYELRSLRWDNLDLHA
CCCCCEEECCCCCCCEEECCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCEEEE
NMIYIPKSKGSFGRKLQLRLADYKLLNTWKDTQNQYFSTSYVITTLSGNVISGSYIESIL
EEEEEECCCCCCCCEEEEEEHHHHHHHHHHHHHCCEEEHEEEEEEECCCCCCCHHHHHHH
QRYSQKAGISKRLTPHILRHVFAVDSYKKTGDLDKVQELLGHRFRSTTEEYLKIVDTRVS
HHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCC
PSKLKWLKI
CCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA