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The map label for this gene is sigM [H]

Identifier: 188585652

GI number: 188585652

Start: 1095353

End: 1095859

Strand: Reverse

Name: sigM [H]

Synonym: Nther_1025

Alternate gene names: 188585652

Gene position: 1095859-1095353 (Counterclockwise)

Preceding gene: 188585654

Following gene: 188585651

Centisome position: 34.62

GC content: 27.02

Gene sequence:

>507_bases
ATGAAAAAAAATCCATTTGAATTAGCCTATAAAAAATACCATAGAGAACTTTACTTCTACGCCTTATCACTTTGCAGACA
CGAAGAATTAGCTAAAGATCTAGTAAGCGAAACTTTTTATAAAGCCTTCTTAACTTTAGAGACACCCGATAATAATATAA
AATTCTGGCTTTTTAGGGTTTTAAAAAATTTATTTATTGATTATCAACGAACAAGCAAATATCATTTTTCACTAGAAGAT
TATGAAATAATTTTGGATAATCAAAATCAAGATTCACCTTTGAAAAAAATTATAAAAAATGAAAGGGATCATGAAATATA
CAAAAAAATATTATCTCTCACTCCTAATAATTACCGTGAAATTATAATCCTCTATTATTATGGAGGTTTAAGTATAAAAG
AAATTGCTGTCACTTTGAATTCCAATCCTTCAACCATTAAAACAACTTTACATAGAGCGCGAAAGAAACTAAAAAGACTG
ATGAAGGAGGATATTTATGAGTTTTAA

Upstream 100 bases:

>100_bases
CAATTTTTTAATCAATTCACTTTTTTAAAAATAAGTGTAACCTTTTACGTTTACATTCGTTTTTTTAGTGGAGGCACTTT
ATGAGAAAGAGGGTACTTTA

Downstream 100 bases:

>100_bases
ACATTTATTAGAAAAATATAAGAAAGGTAAAGCTACTAAAGATGAAATAAAGCTTGTGGAGCAGGAATTAGAAAAATTCG
AAGCAATTGAAGATTATTAT

Product: RNA polymerase, sigma-24 subunit, ECF subfamily

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 168; Mature: 168

Protein sequence:

>168_residues
MKKNPFELAYKKYHRELYFYALSLCRHEELAKDLVSETFYKAFLTLETPDNNIKFWLFRVLKNLFIDYQRTSKYHFSLED
YEIILDNQNQDSPLKKIIKNERDHEIYKKILSLTPNNYREIIILYYYGGLSIKEIAVTLNSNPSTIKTTLHRARKKLKRL
MKEDIYEF

Sequences:

>Translated_168_residues
MKKNPFELAYKKYHRELYFYALSLCRHEELAKDLVSETFYKAFLTLETPDNNIKFWLFRVLKNLFIDYQRTSKYHFSLED
YEIILDNQNQDSPLKKIIKNERDHEIYKKILSLTPNNYREIIILYYYGGLSIKEIAVTLNSNPSTIKTTLHRARKKLKRL
MKEDIYEF
>Mature_168_residues
MKKNPFELAYKKYHRELYFYALSLCRHEELAKDLVSETFYKAFLTLETPDNNIKFWLFRVLKNLFIDYQRTSKYHFSLED
YEIILDNQNQDSPLKKIIKNERDHEIYKKILSLTPNNYREIIILYYYGGLSIKEIAVTLNSNPSTIKTTLHRARKKLKRL
MKEDIYEF

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor may be involved in the maintenance of membrane and cell wall integrity in response to salt, acid and e

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014296
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 20406; Mature: 20406

Theoretical pI: Translated: 9.67; Mature: 9.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKNPFELAYKKYHRELYFYALSLCRHEELAKDLVSETFYKAFLTLETPDNNIKFWLFRV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHH
LKNLFIDYQRTSKYHFSLEDYEIILDNQNQDSPLKKIIKNERDHEIYKKILSLTPNNYRE
HHHHHHHHHCCCEEEEECCCEEEEECCCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCCCE
IIILYYYGGLSIKEIAVTLNSNPSTIKTTLHRARKKLKRLMKEDIYEF
EEEEEEECCCEEEHEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKKNPFELAYKKYHRELYFYALSLCRHEELAKDLVSETFYKAFLTLETPDNNIKFWLFRV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHH
LKNLFIDYQRTSKYHFSLEDYEIILDNQNQDSPLKKIIKNERDHEIYKKILSLTPNNYRE
HHHHHHHHHCCCEEEEECCCEEEEECCCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCCCE
IIILYYYGGLSIKEIAVTLNSNPSTIKTTLHRARKKLKRLMKEDIYEF
EEEEEEECCCEEEHEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377; 12775685; 10216858 [H]