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The map label for this gene is pdtaR [H]

Identifier: 188585590

GI number: 188585590

Start: 1022709

End: 1023284

Strand: Direct

Name: pdtaR [H]

Synonym: Nther_0963

Alternate gene names: 188585590

Gene position: 1022709-1023284 (Clockwise)

Preceding gene: 188585589

Following gene: 188585591

Centisome position: 32.31

GC content: 34.2

Gene sequence:

>576_bases
GTGCCTGAGGCGAATGTAGTAGTTGCCTCCGGAGAAACTGAGTATAGGAAACACTTAAAAAGTACGCTAATGCAGTGTGG
GTATAAGTTGGTTGGTGAGAGTGATAATATGGATGCCACTTTACGCCTATATCATAGGCTGATTCCTCGATTAATTATAG
CCGATATTGATAATATAGATTTTGATGTGATTGGTCTACTGAATGTGATAGAGCCTGTTGGTGAAACAGCTATAGTTATC
CTAACAAGTAATATTCAACAACAACTATTGTCTATGGCTAAAGAATCATGGATTCTTACTCCGATTATGAAACCTGTCAA
TAAGCAGGCATTGATTGCTTATTTAGAAATTGCCATGGCTAATTTCGAGCGATATCAAAAACTACAATCTGAACTAAACA
ATTTAAAAGATGATTTAGAGACTAGAAAGTTAGTTGATCGAGCTAAAAATATACTGATGAAGAAGAAAAAGATGACTGAA
GCGGAAGCCTTTAGAAGTATTCAAAAAAAGAGTATGGATAATTCAATCCCTATGAAAAAAGTAGCTGAATCTATTATTAT
TACGAATGATTTTTAA

Upstream 100 bases:

>100_bases
TGTCAGCAGTTCACCAGTGGGAGCTAGACGAATATTTAACAAAATTTTAGTATATAAATTAGAGTCTATTTCATGAAATC
TTAGGGATGGAGTGGTTACA

Downstream 100 bases:

>100_bases
ATAATAATGAATTTAATTAAAACTAATCAGAGTACTCTTTAGAAAGGAATATGTGGTTTGTCGTCTTTCTTAGAAGCTGT
CAAAAAGATTACCGCTGATT

Product: response regulator receiver and ANTAR domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 191; Mature: 190

Protein sequence:

>191_residues
MPEANVVVASGETEYRKHLKSTLMQCGYKLVGESDNMDATLRLYHRLIPRLIIADIDNIDFDVIGLLNVIEPVGETAIVI
LTSNIQQQLLSMAKESWILTPIMKPVNKQALIAYLEIAMANFERYQKLQSELNNLKDDLETRKLVDRAKNILMKKKKMTE
AEAFRSIQKKSMDNSIPMKKVAESIIITNDF

Sequences:

>Translated_191_residues
MPEANVVVASGETEYRKHLKSTLMQCGYKLVGESDNMDATLRLYHRLIPRLIIADIDNIDFDVIGLLNVIEPVGETAIVI
LTSNIQQQLLSMAKESWILTPIMKPVNKQALIAYLEIAMANFERYQKLQSELNNLKDDLETRKLVDRAKNILMKKKKMTE
AEAFRSIQKKSMDNSIPMKKVAESIIITNDF
>Mature_190_residues
PEANVVVASGETEYRKHLKSTLMQCGYKLVGESDNMDATLRLYHRLIPRLIIADIDNIDFDVIGLLNVIEPVGETAIVIL
TSNIQQQLLSMAKESWILTPIMKPVNKQALIAYLEIAMANFERYQKLQSELNNLKDDLETRKLVDRAKNILMKKKKMTEA
EAFRSIQKKSMDNSIPMKKVAESIIITNDF

Specific function: Member of the two-component regulatory system pdtaR/pdtaS [H]

COG id: COG3707

COG function: function code T; Response regulator with putative antiterminator output domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005561
- InterPro:   IPR011006
- InterPro:   IPR008327
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03861 ANTAR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 21784; Mature: 21653

Theoretical pI: Translated: 8.42; Mature: 8.42

Prosite motif: PS50921 ANTAR ; PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPEANVVVASGETEYRKHLKSTLMQCGYKLVGESDNMDATLRLYHRLIPRLIIADIDNID
CCCCCEEEECCCHHHHHHHHHHHHHCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
FDVIGLLNVIEPVGETAIVILTSNIQQQLLSMAKESWILTPIMKPVNKQALIAYLEIAMA
HHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHH
NFERYQKLQSELNNLKDDLETRKLVDRAKNILMKKKKMTEAEAFRSIQKKSMDNSIPMKK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
VAESIIITNDF
HHHHHHHCCCC
>Mature Secondary Structure 
PEANVVVASGETEYRKHLKSTLMQCGYKLVGESDNMDATLRLYHRLIPRLIIADIDNID
CCCCEEEECCCHHHHHHHHHHHHHCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
FDVIGLLNVIEPVGETAIVILTSNIQQQLLSMAKESWILTPIMKPVNKQALIAYLEIAMA
HHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHH
NFERYQKLQSELNNLKDDLETRKLVDRAKNILMKKKKMTEAEAFRSIQKKSMDNSIPMKK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
VAESIIITNDF
HHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]