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The map label for this gene is 188585580

Identifier: 188585580

GI number: 188585580

Start: 1009892

End: 1010548

Strand: Reverse

Name: 188585580

Synonym: Nther_0953

Alternate gene names: NA

Gene position: 1010548-1009892 (Counterclockwise)

Preceding gene: 188585581

Following gene: 188585576

Centisome position: 31.92

GC content: 37.6

Gene sequence:

>657_bases
ATGATACCATTAAAAGACAATATTAGGTCAAGAAAGTTACCTGTAATGACGGTAGGATTAATCATTCTTAATATTTGGAT
ATTTTTTCAGCAAACTCAACTACCACCTGATCAGCTCCAGCTCCTAATAGCAGAGTTTGGATTCATTCCAAAAAGAATAG
TACTAGCTTATAACCAAGGCGAACTTTCTTTACTACCTCTAGCCACACCTGTAACTTCTGCCTTTTTTCACGGAAATTTA
ATACATTTAGCCGGCAATATGTTATATCTTTGGGTTTTTGGTGATAATGTAGAAGATAAACTGGGTAGTTTTAGATTTTT
GTTATTTTACCTAGTAGCTGCAATCTTTGGTAGCCTGGGCCATCTATTGAGTGATCCTTTATCAGTTCAACCTGCCATAG
GTGCTAGTGGTGCCGTTGCCGGAGTACTAGGAGCTTATTTTATTTTTTTCCCTTACGCTAAAGTTTTTACACTAGTCCCC
ATCGGTATTTTTATTACGTTTATTCATCTTCCGGCTGTTATTTTTCTGGGCATTTGGATATTAATCCAAGGTGCCAATGC
CGCATTGCCTGCCCCTGGAGAAGCTGTCTCTGTAGCCTGGTGGGCACATATAAGTGGTTTCATAATGGGTGTAATTTATT
CATTATTCAAAAAATAA

Upstream 100 bases:

>100_bases
TAAGTCTAATGACAAAATTTGGTTTAGTTAATAATAACAGTTATAATAGTTTTATATATATGATATATCTCTTAAACAAA
AACGAGGTGTATGTTTTATT

Downstream 100 bases:

>100_bases
TTTACCCAGCTCATAATTAATACTGGGACATGCGAAATTAAGATAGGGGTTGTCGCTTGGACAACCCCTAAGGTAGATGA
AAAAATCTGGCTAGCTTATT

Product: Rhomboid family protein

Products: NA

Alternate protein names: Peptidase; Integral Membrane Protein; Rhomboid-Like Protein; S54 Family Peptidase; Peptidase Protein; Rhomboid Family Transmembrane Protein; LOW QUALITY PROTEIN Integral Membrane Protein; Transmembrane Rhomboid Family Protein; Subfamily; Rhomboid Serine Protease; Rhomboid Family Membrane Protein; Membrane Associated Serine Protease; Integral Membrane Rhomboid Family Protein; Regulatory Proteins IclR

Number of amino acids: Translated: 218; Mature: 218

Protein sequence:

>218_residues
MIPLKDNIRSRKLPVMTVGLIILNIWIFFQQTQLPPDQLQLLIAEFGFIPKRIVLAYNQGELSLLPLATPVTSAFFHGNL
IHLAGNMLYLWVFGDNVEDKLGSFRFLLFYLVAAIFGSLGHLLSDPLSVQPAIGASGAVAGVLGAYFIFFPYAKVFTLVP
IGIFITFIHLPAVIFLGIWILIQGANAALPAPGEAVSVAWWAHISGFIMGVIYSLFKK

Sequences:

>Translated_218_residues
MIPLKDNIRSRKLPVMTVGLIILNIWIFFQQTQLPPDQLQLLIAEFGFIPKRIVLAYNQGELSLLPLATPVTSAFFHGNL
IHLAGNMLYLWVFGDNVEDKLGSFRFLLFYLVAAIFGSLGHLLSDPLSVQPAIGASGAVAGVLGAYFIFFPYAKVFTLVP
IGIFITFIHLPAVIFLGIWILIQGANAALPAPGEAVSVAWWAHISGFIMGVIYSLFKK
>Mature_218_residues
MIPLKDNIRSRKLPVMTVGLIILNIWIFFQQTQLPPDQLQLLIAEFGFIPKRIVLAYNQGELSLLPLATPVTSAFFHGNL
IHLAGNMLYLWVFGDNVEDKLGSFRFLLFYLVAAIFGSLGHLLSDPLSVQPAIGASGAVAGVLGAYFIFFPYAKVFTLVP
IGIFITFIHLPAVIFLGIWILIQGANAALPAPGEAVSVAWWAHISGFIMGVIYSLFKK

Specific function: Unknown

COG id: COG0705

COG function: function code R; Uncharacterized membrane protein (homolog of Drosophila rhomboid)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Saccharomyces cerevisiae, GI6321538, Length=156, Percent_Identity=35.8974358974359, Blast_Score=72, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23944; Mature: 23944

Theoretical pI: Translated: 9.35; Mature: 9.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIPLKDNIRSRKLPVMTVGLIILNIWIFFQQTQLPPDQLQLLIAEFGFIPKRIVLAYNQG
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEEEECCC
ELSLLPLATPVTSAFFHGNLIHLAGNMLYLWVFGDNVEDKLGSFRFLLFYLVAAIFGSLG
CEEEEECCHHHHHHHHCCCHHEEECCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH
HLLSDPLSVQPAIGASGAVAGVLGAYFIFFPYAKVFTLVPIGIFITFIHLPAVIFLGIWI
HHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LIQGANAALPAPGEAVSVAWWAHISGFIMGVIYSLFKK
HHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MIPLKDNIRSRKLPVMTVGLIILNIWIFFQQTQLPPDQLQLLIAEFGFIPKRIVLAYNQG
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEEEECCC
ELSLLPLATPVTSAFFHGNLIHLAGNMLYLWVFGDNVEDKLGSFRFLLFYLVAAIFGSLG
CEEEEECCHHHHHHHHCCCHHEEECCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH
HLLSDPLSVQPAIGASGAVAGVLGAYFIFFPYAKVFTLVPIGIFITFIHLPAVIFLGIWI
HHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LIQGANAALPAPGEAVSVAWWAHISGFIMGVIYSLFKK
HHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA