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The map label for this gene is ydhY [C]

Identifier: 188585464

GI number: 188585464

Start: 876504

End: 877952

Strand: Reverse

Name: ydhY [C]

Synonym: Nther_0836

Alternate gene names: 188585464

Gene position: 877952-876504 (Counterclockwise)

Preceding gene: 188585465

Following gene: 188585461

Centisome position: 27.73

GC content: 32.78

Gene sequence:

>1449_bases
GTGAGAAAATTTGAAAATAAAATTCAAGAATCGAAATATGAAGTTTTAAGAGAAGTATCTAAAGCAGCGTTTGAAGGAAC
ATTAGATAAAGAATTAATTCATATCCCTAAAAGAATTGATCTAGAACCTAAAATAAGATGTTGTATCCATAAGGAAAGAG
TTGTAACTTATGAAAGAATAAAAGTGGCTCTCGGAGGAAATAAAGAAAATAATAATATCATAGAAGTGATAGATGAGGCT
TGTGATGAATGTTTTGATACACGGTATGTTATTACAGAAGCTTGTAGAGGATGCTTGGCTAATCACTGTGTTTCTTACTG
TCCTGTAGGGGCCATTGAATTTGTTCAACATAAAGCAAAAATAGATGGTCAAAAATGCATAGAATGTGGAAAATGTAAAG
ATGCATGTCCATACAATGCAATAGTAGATGTGATGAGACCATGTAAAAAGGCATGTGGAGTAAATGCAATAAATATTGAA
GTAAATAAAAAAGCTACTATTGATAATGACAAGTGTATACAATGCGGAGCTTGTGTGTATCAATGTCCTTTTGGCGCAAT
AATGGATAAATCATATATAACTGAAGTAATTGAATTGCTAAAAAATGCAGATGAAAACAATAAAGTTTATGCAATTATTG
CTCCTGCCATAGCTAGTCAGTTTACATACGCAAGTATTGGACAAGTAATAACAGGTATCAAAAAATTAGGTTTCCATGAT
GTAATTGAAGTAGCTTTAGGAGCCGATATGGTGGCGGTTAAAGAGACACACGAATATGCTCAAACTATAGAAAACAAAAA
AACTATCACTAGTTCTTGCTGTCCGTCTTTTGTCCAGTACATTCTTAATGAATATCCTGAGTTAAAAGACAATATTTCAA
GTATGATTTCTCCTATGATTGCCATTTCTAAATTAATTAAAGATTTGGATCCTAAGAGCAAAGTAGTATTTATAGGCCCT
TGTACCGCCAAAAAAATGGAGATACAACAAAAAGATCTTCAAGGAATAACAGACTATGCATTGACATTCGAAGAGCTAGC
AGCAATGATTGATTCAAAAGGTCTTGAGTTACAAGATCAAGAAGAAAGTTTGTTAGATAACGCTTCTTATTATGGTAGGA
TATTTGCCCGTACAGGTGGAATTTCTCAAGCTATTGAAAATATCATTAAGGAAGAAAAGCTTGATGTGCCATTTGATCCA
GTAAGTTGTGATGGCATCATTGAGTGTGATAAGGTTTTGAAAAAACTTAAACATAACCGTTGTGACAATACATTTATTGA
AGGAATGGCTTGTAAAAATGGTTGTATCGGCGGAGCTACTTCTTTAAGTCATGGGCCTAAGAACAAAAAAGAAGTAGATA
AATATGCAAAGTTAGCTTTAGAGCCTGACTCTAATTCATCATTAAGAGTTTTTGATATAGAGTCCATAGATTTTCATCGA
GAATTTTAA

Upstream 100 bases:

>100_bases
ATGTTGATAACTGTAAAGTTTCAATTTTACTTATACCCTAAAGTATACAAAAAAAGTCATCTATAAGCCAAAAAAATATA
TCTTGAGGAGGTAGTGGCAA

Downstream 100 bases:

>100_bases
TCTACTATAGTAATTTAATTAAACACCATGCAAAAAAGCCCGTGCTATATGCACGGGCTTTTGCTATCAATAAATTTTTA
AATGATTACTGCTGAGTCTG

Product: hydrogenase large subunit domain protein

Products: NA

Alternate protein names: CpI; Fe-only hydrogenase; [Fe] hydrogenase [H]

Number of amino acids: Translated: 482; Mature: 482

Protein sequence:

>482_residues
MRKFENKIQESKYEVLREVSKAAFEGTLDKELIHIPKRIDLEPKIRCCIHKERVVTYERIKVALGGNKENNNIIEVIDEA
CDECFDTRYVITEACRGCLANHCVSYCPVGAIEFVQHKAKIDGQKCIECGKCKDACPYNAIVDVMRPCKKACGVNAINIE
VNKKATIDNDKCIQCGACVYQCPFGAIMDKSYITEVIELLKNADENNKVYAIIAPAIASQFTYASIGQVITGIKKLGFHD
VIEVALGADMVAVKETHEYAQTIENKKTITSSCCPSFVQYILNEYPELKDNISSMISPMIAISKLIKDLDPKSKVVFIGP
CTAKKMEIQQKDLQGITDYALTFEELAAMIDSKGLELQDQEESLLDNASYYGRIFARTGGISQAIENIIKEEKLDVPFDP
VSCDGIIECDKVLKKLKHNRCDNTFIEGMACKNGCIGGATSLSHGPKNKKEVDKYAKLALEPDSNSSLRVFDIESIDFHR
EF

Sequences:

>Translated_482_residues
MRKFENKIQESKYEVLREVSKAAFEGTLDKELIHIPKRIDLEPKIRCCIHKERVVTYERIKVALGGNKENNNIIEVIDEA
CDECFDTRYVITEACRGCLANHCVSYCPVGAIEFVQHKAKIDGQKCIECGKCKDACPYNAIVDVMRPCKKACGVNAINIE
VNKKATIDNDKCIQCGACVYQCPFGAIMDKSYITEVIELLKNADENNKVYAIIAPAIASQFTYASIGQVITGIKKLGFHD
VIEVALGADMVAVKETHEYAQTIENKKTITSSCCPSFVQYILNEYPELKDNISSMISPMIAISKLIKDLDPKSKVVFIGP
CTAKKMEIQQKDLQGITDYALTFEELAAMIDSKGLELQDQEESLLDNASYYGRIFARTGGISQAIENIIKEEKLDVPFDP
VSCDGIIECDKVLKKLKHNRCDNTFIEGMACKNGCIGGATSLSHGPKNKKEVDKYAKLALEPDSNSSLRVFDIESIDFHR
EF
>Mature_482_residues
MRKFENKIQESKYEVLREVSKAAFEGTLDKELIHIPKRIDLEPKIRCCIHKERVVTYERIKVALGGNKENNNIIEVIDEA
CDECFDTRYVITEACRGCLANHCVSYCPVGAIEFVQHKAKIDGQKCIECGKCKDACPYNAIVDVMRPCKKACGVNAINIE
VNKKATIDNDKCIQCGACVYQCPFGAIMDKSYITEVIELLKNADENNKVYAIIAPAIASQFTYASIGQVITGIKKLGFHD
VIEVALGADMVAVKETHEYAQTIENKKTITSSCCPSFVQYILNEYPELKDNISSMISPMIAISKLIKDLDPKSKVVFIGP
CTAKKMEIQQKDLQGITDYALTFEELAAMIDSKGLELQDQEESLLDNASYYGRIFARTGGISQAIENIIKEEKLDVPFDP
VSCDGIIECDKVLKKLKHNRCDNTFIEGMACKNGCIGGATSLSHGPKNKKEVDKYAKLALEPDSNSSLRVFDIESIDFHR
EF

Specific function: Unknown

COG id: COG4624

COG function: function code R; Iron only hydrogenase large subunit, C-terminal domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR012675
- InterPro:   IPR009016
- InterPro:   IPR004108
- InterPro:   IPR003149
- InterPro:   IPR013352
- InterPro:   IPR001041 [H]

Pfam domain/function: PF02906 Fe_hyd_lg_C; PF02256 Fe_hyd_SSU [H]

EC number: =1.12.7.2 [H]

Molecular weight: Translated: 53761; Mature: 53761

Theoretical pI: Translated: 5.74; Mature: 5.74

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
7.3 %Cys+Met (Translated Protein)
5.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
7.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKFENKIQESKYEVLREVSKAAFEGTLDKELIHIPKRIDLEPKIRCCIHKERVVTYERI
CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHE
KVALGGNKENNNIIEVIDEACDECFDTRYVITEACRGCLANHCVSYCPVGAIEFVQHKAK
EEEECCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
IDGQKCIECGKCKDACPYNAIVDVMRPCKKACGVNAINIEVNKKATIDNDKCIQCGACVY
CCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCEECCCHHH
QCPFGAIMDKSYITEVIELLKNADENNKVYAIIAPAIASQFTYASIGQVITGIKKLGFHD
HCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHCHHH
VIEVALGADMVAVKETHEYAQTIENKKTITSSCCPSFVQYILNEYPELKDNISSMISPMI
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
AISKLIKDLDPKSKVVFIGPCTAKKMEIQQKDLQGITDYALTFEELAAMIDSKGLELQDQ
HHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH
EESLLDNASYYGRIFARTGGISQAIENIIKEEKLDVPFDPVSCDGIIECDKVLKKLKHNR
HHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCC
CDNTFIEGMACKNGCIGGATSLSHGPKNKKEVDKYAKLALEPDSNSSLRVFDIESIDFHR
CCCHHHHCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHEEECCCCCCCEEEEEECCCCCCC
EF
CC
>Mature Secondary Structure
MRKFENKIQESKYEVLREVSKAAFEGTLDKELIHIPKRIDLEPKIRCCIHKERVVTYERI
CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHE
KVALGGNKENNNIIEVIDEACDECFDTRYVITEACRGCLANHCVSYCPVGAIEFVQHKAK
EEEECCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
IDGQKCIECGKCKDACPYNAIVDVMRPCKKACGVNAINIEVNKKATIDNDKCIQCGACVY
CCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCEECCCHHH
QCPFGAIMDKSYITEVIELLKNADENNKVYAIIAPAIASQFTYASIGQVITGIKKLGFHD
HCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHCHHH
VIEVALGADMVAVKETHEYAQTIENKKTITSSCCPSFVQYILNEYPELKDNISSMISPMI
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
AISKLIKDLDPKSKVVFIGPCTAKKMEIQQKDLQGITDYALTFEELAAMIDSKGLELQDQ
HHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH
EESLLDNASYYGRIFARTGGISQAIENIIKEEKLDVPFDPVSCDGIIECDKVLKKLKHNR
HHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCC
CDNTFIEGMACKNGCIGGATSLSHGPKNKKEVDKYAKLALEPDSNSSLRVFDIESIDFHR
CCCHHHHCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHEEECCCCCCCEEEEEECCCCCCC
EF
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1911757; 9836629; 10529166 [H]