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The map label for this gene is ydcI [H]

Identifier: 188585248

GI number: 188585248

Start: 635976

End: 638159

Strand: Direct

Name: ydcI [H]

Synonym: Nther_0610

Alternate gene names: 188585248

Gene position: 635976-638159 (Clockwise)

Preceding gene: 188585245

Following gene: 188585249

Centisome position: 20.09

GC content: 37.5

Gene sequence:

>2184_bases
TTGGATCAAAAGATCTTAAAACAAGTTTCACAGGAAGAAAATTTTCCGGAATCAAAAGTAGCCAAAGCTATCAATCTCAT
AAAAGAAGCAGGTAATACAGTTCCTTTTGTTGCCAGGTATAGAAAAAATGAAACAGGCAATTTATCCGAGGATGAATTGA
GATCTATTGTTGAAAGATGGGATTATCTCGTAAATTTACAGGATAGAAAAGCGGAGATAATTGCTACTCTTGAAAAAAGA
GAAAAATTAACCCCGGAGTTAAAAGAAGCTATTCAAAAATCTGAAACAATGCAAGAATTAGAAGAACTTTATAAACCTTA
TAAGCAAAAAAAGAAAACCCGGGGTATGAAGGCCAAAGAAAAAGGTTTAGAACCTCTAGCTAACAAGCTTCGCCAAGGAG
AACTTAAAACTGAAGCTGAAGCTGAATCTACAGCCAGTGATTTTATTGACGATGAACAAGGAGTTAATTCAACTGACGAG
GCACTGCAGGGTGCTCAGGACATTATCGCAGAACAGATTTCAGAAACAGTGGATAATCGTCGAGATGTTAAAGAAATAGC
AGCTCCAGAGACCTATCTTGAAACTCAACTAAAAGATCAGGCTCAAGATGAAAACAAGGTATATCAAGATTACTACGATT
ACAGGGAAAATTTGAAAAAGATGCCTTTACATAGAGCGATGGCAATTAATAGGGGCGAAAAAGAAGGAGTTTTAAAAGTC
TCTCTTAGTTCTCCTGAAGAAAGAATAATTGATAAAGTAGCCCTTAGAGAACTGGTATCCCTGGAAAATGCCGGATTTTC
GAGAGAATTGGTATTTGAAGCAGTTAAAGATGCCTGTAAAAGATTGATTATCCCATCTATTCAAAGAGAACTGAGGACTA
GTAAAACAGAACAAGCGGAAGAGCATGCCATCAAAATCTTTTCTCAAAATTTGGAACGTCTATTAATGCAGCCCCCCATT
AAAGGTAAAAATGTCATGGGAATTGATCCGGCTTATAAATCTGGTTGTAAAATTGCAGTGGTAGATTACAAAGGAGATAT
GCAGGAAGTAGATGTTATTTATCCTACACCTCCTTTTAACAAAACAGAACAGGCTGCAAAAAAGGTGATTTCTTTGCTAA
ATAAATATCAGGTAGAAATTATAGCTATAGGAAATGGAACTGCTTCCAGGGAAACCGAAGAATTTGTTTCCGAGACTATT
GAGGATGTGGAACTATCCCTGGAGGTTCAGTATGCCATAGTGAGCGAAGATGGAGCCAGCGTATATTCGGCTTCCAAACT
GGCAGCTGAAGAATTTCCAGAGCTAGATGTCCAGGAAAGAAGTGCTATTTCCATTGCCAGGCGAGTAATCGATCCCCTGG
CGGAACTTGTTAAAATAGATCCCAAATCTATCGGAGTTGGTCAATATCAACATGATGTTCCCCAGAGCAAGTTAAAAGAG
GCCGTTCAATTTGTTGTAGAAAAGGTTGTCAATCAAGTAGGTGTAGATGTAAACACTGCATCTGTCCATTTGCTTCGGTA
TATTTCAGGTCTTAACAAAAAAAGTGCTGAAAATATGGTAAATACCAGAAGTGAACTAGGAGGATTTGACAGCAGAGCCC
AATTAACTGAAGTTAAAGGGTTAGGTGCCAAGACATTTGAGCAATGTGCTGGATTTTTGAGAATACTTGACGGCAGTAAC
CCGCTGGATAAAACCGCTATTCATCCCGAATCTTATCATATTGCCGAGGGAATAATTGCTCATCTGAACGAAGTTCCGGA
AAATATAGGCTCTGAAGCTTTGAGAACGGGTGTAGATAGTTTATTGAACAATAAAAATCAAATTCAGTCTCTTTGTCAGG
AATTTGATACCGACAAATATACTCTAGAGGATATCTTAACTGGTTTAAAGAAACCTTTATATGATCCCAGAGAAGAGTTT
GACAAACCAAGGTTAAAAAAAGATGTTATGAAACTTGAAGATCTTAGTGAAGGAATGATCTTGGAAGGAGAAATTAGGAA
TGTAGTGGATTTTGGTGCCTTTGTAGACCTTGGCATCAAAGAAGACGGTTTGATCCACATATCTAATTTAAGTGAGAAAT
TTGTTAAACATCCCATGGAAATAGTGTCTGTTGGGGATGTGGTTCAAGTAGAAATAGTCAGTATTGATAAGGATAGAGGC
AGAATAGGTTTGAAAAAAGTTTAA

Upstream 100 bases:

>100_bases
ATTTAATTTTATTAGAAAAACATACAGTTGAAAACAATAATCAACAATGTATAATAAAGTTATAATTTCAATTTATGTAA
GTATAATCAGGAGGGATAAT

Downstream 100 bases:

>100_bases
AAGGAGTTTAATTGTAGATAATTAAATATTGGCATTAGGAGCTGATTGAATTCAAGGAGGGATTTTATTGTGAGTAGACA
ATCTGATACCAGTCAGATAA

Product: RNA binding S1 domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 727; Mature: 727

Protein sequence:

>727_residues
MDQKILKQVSQEENFPESKVAKAINLIKEAGNTVPFVARYRKNETGNLSEDELRSIVERWDYLVNLQDRKAEIIATLEKR
EKLTPELKEAIQKSETMQELEELYKPYKQKKKTRGMKAKEKGLEPLANKLRQGELKTEAEAESTASDFIDDEQGVNSTDE
ALQGAQDIIAEQISETVDNRRDVKEIAAPETYLETQLKDQAQDENKVYQDYYDYRENLKKMPLHRAMAINRGEKEGVLKV
SLSSPEERIIDKVALRELVSLENAGFSRELVFEAVKDACKRLIIPSIQRELRTSKTEQAEEHAIKIFSQNLERLLMQPPI
KGKNVMGIDPAYKSGCKIAVVDYKGDMQEVDVIYPTPPFNKTEQAAKKVISLLNKYQVEIIAIGNGTASRETEEFVSETI
EDVELSLEVQYAIVSEDGASVYSASKLAAEEFPELDVQERSAISIARRVIDPLAELVKIDPKSIGVGQYQHDVPQSKLKE
AVQFVVEKVVNQVGVDVNTASVHLLRYISGLNKKSAENMVNTRSELGGFDSRAQLTEVKGLGAKTFEQCAGFLRILDGSN
PLDKTAIHPESYHIAEGIIAHLNEVPENIGSEALRTGVDSLLNNKNQIQSLCQEFDTDKYTLEDILTGLKKPLYDPREEF
DKPRLKKDVMKLEDLSEGMILEGEIRNVVDFGAFVDLGIKEDGLIHISNLSEKFVKHPMEIVSVGDVVQVEIVSIDKDRG
RIGLKKV

Sequences:

>Translated_727_residues
MDQKILKQVSQEENFPESKVAKAINLIKEAGNTVPFVARYRKNETGNLSEDELRSIVERWDYLVNLQDRKAEIIATLEKR
EKLTPELKEAIQKSETMQELEELYKPYKQKKKTRGMKAKEKGLEPLANKLRQGELKTEAEAESTASDFIDDEQGVNSTDE
ALQGAQDIIAEQISETVDNRRDVKEIAAPETYLETQLKDQAQDENKVYQDYYDYRENLKKMPLHRAMAINRGEKEGVLKV
SLSSPEERIIDKVALRELVSLENAGFSRELVFEAVKDACKRLIIPSIQRELRTSKTEQAEEHAIKIFSQNLERLLMQPPI
KGKNVMGIDPAYKSGCKIAVVDYKGDMQEVDVIYPTPPFNKTEQAAKKVISLLNKYQVEIIAIGNGTASRETEEFVSETI
EDVELSLEVQYAIVSEDGASVYSASKLAAEEFPELDVQERSAISIARRVIDPLAELVKIDPKSIGVGQYQHDVPQSKLKE
AVQFVVEKVVNQVGVDVNTASVHLLRYISGLNKKSAENMVNTRSELGGFDSRAQLTEVKGLGAKTFEQCAGFLRILDGSN
PLDKTAIHPESYHIAEGIIAHLNEVPENIGSEALRTGVDSLLNNKNQIQSLCQEFDTDKYTLEDILTGLKKPLYDPREEF
DKPRLKKDVMKLEDLSEGMILEGEIRNVVDFGAFVDLGIKEDGLIHISNLSEKFVKHPMEIVSVGDVVQVEIVSIDKDRG
RIGLKKV
>Mature_727_residues
MDQKILKQVSQEENFPESKVAKAINLIKEAGNTVPFVARYRKNETGNLSEDELRSIVERWDYLVNLQDRKAEIIATLEKR
EKLTPELKEAIQKSETMQELEELYKPYKQKKKTRGMKAKEKGLEPLANKLRQGELKTEAEAESTASDFIDDEQGVNSTDE
ALQGAQDIIAEQISETVDNRRDVKEIAAPETYLETQLKDQAQDENKVYQDYYDYRENLKKMPLHRAMAINRGEKEGVLKV
SLSSPEERIIDKVALRELVSLENAGFSRELVFEAVKDACKRLIIPSIQRELRTSKTEQAEEHAIKIFSQNLERLLMQPPI
KGKNVMGIDPAYKSGCKIAVVDYKGDMQEVDVIYPTPPFNKTEQAAKKVISLLNKYQVEIIAIGNGTASRETEEFVSETI
EDVELSLEVQYAIVSEDGASVYSASKLAAEEFPELDVQERSAISIARRVIDPLAELVKIDPKSIGVGQYQHDVPQSKLKE
AVQFVVEKVVNQVGVDVNTASVHLLRYISGLNKKSAENMVNTRSELGGFDSRAQLTEVKGLGAKTFEQCAGFLRILDGSN
PLDKTAIHPESYHIAEGIIAHLNEVPENIGSEALRTGVDSLLNNKNQIQSLCQEFDTDKYTLEDILTGLKKPLYDPREEF
DKPRLKKDVMKLEDLSEGMILEGEIRNVVDFGAFVDLGIKEDGLIHISNLSEKFVKHPMEIVSVGDVVQVEIVSIDKDRG
RIGLKKV

Specific function: Unknown

COG id: COG2183

COG function: function code K; Transcriptional accessory protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Homo sapiens, GI221136781, Length=796, Percent_Identity=34.1708542713568, Blast_Score=415, Evalue=1e-116,
Organism=Homo sapiens, GI27597090, Length=581, Percent_Identity=24.4406196213425, Blast_Score=88, Evalue=3e-17,
Organism=Escherichia coli, GI87082262, Length=737, Percent_Identity=42.1981004070556, Blast_Score=540, Evalue=1e-155,
Organism=Escherichia coli, GI1787140, Length=78, Percent_Identity=50, Blast_Score=80, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI17511129, Length=762, Percent_Identity=29.7900262467192, Blast_Score=278, Evalue=7e-75,
Organism=Caenorhabditis elegans, GI17552892, Length=290, Percent_Identity=24.1379310344828, Blast_Score=75, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6321552, Length=188, Percent_Identity=29.7872340425532, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI62484314, Length=746, Percent_Identity=33.1099195710456, Blast_Score=416, Evalue=1e-116,
Organism=Drosophila melanogaster, GI24640080, Length=752, Percent_Identity=22.6063829787234, Blast_Score=108, Evalue=2e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR022967
- InterPro:   IPR018974
- InterPro:   IPR023097 [H]

Pfam domain/function: PF00575 S1; PF09371 Tex_N [H]

EC number: NA

Molecular weight: Translated: 81752; Mature: 81752

Theoretical pI: Translated: 4.80; Mature: 4.80

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDQKILKQVSQEENFPESKVAKAINLIKEAGNTVPFVARYRKNETGNLSEDELRSIVERW
CCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHH
DYLVNLQDRKAEIIATLEKREKLTPELKEAIQKSETMQELEELYKPYKQKKKTRGMKAKE
HHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
KGLEPLANKLRQGELKTEAEAESTASDFIDDEQGVNSTDEALQGAQDIIAEQISETVDNR
HCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
RDVKEIAAPETYLETQLKDQAQDENKVYQDYYDYRENLKKMPLHRAMAINRGEKEGVLKV
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCEEEE
SLSSPEERIIDKVALRELVSLENAGFSRELVFEAVKDACKRLIIPSIQRELRTSKTEQAE
ECCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EHAIKIFSQNLERLLMQPPIKGKNVMGIDPAYKSGCKIAVVDYKGDMQEVDVIYPTPPFN
HHHHHHHHHHHHHHHHCCCCCCCCEECCCHHHHCCCEEEEEECCCCCCCCCEEECCCCCC
KTEQAAKKVISLLNKYQVEIIAIGNGTASRETEEFVSETIEDVELSLEVQYAIVSEDGAS
HHHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHHEEEEEEEEEECCCCH
VYSASKLAAEEFPELDVQERSAISIARRVIDPLAELVKIDPKSIGVGQYQHDVPQSKLKE
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHH
AVQFVVEKVVNQVGVDVNTASVHLLRYISGLNKKSAENMVNTRSELGGFDSRAQLTEVKG
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHC
LGAKTFEQCAGFLRILDGSNPLDKTAIHPESYHIAEGIIAHLNEVPENIGSEALRTGVDS
CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLNNKNQIQSLCQEFDTDKYTLEDILTGLKKPLYDPREEFDKPRLKKDVMKLEDLSEGMI
HHCCHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHHHCCCCCE
LEGEIRNVVDFGAFVDLGIKEDGLIHISNLSEKFVKHPMEIVSVGDVVQVEIVSIDKDRG
EECHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHCCHHHHCCCCEEEEEEEEEECCCC
RIGLKKV
CCCCCCC
>Mature Secondary Structure
MDQKILKQVSQEENFPESKVAKAINLIKEAGNTVPFVARYRKNETGNLSEDELRSIVERW
CCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHH
DYLVNLQDRKAEIIATLEKREKLTPELKEAIQKSETMQELEELYKPYKQKKKTRGMKAKE
HHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
KGLEPLANKLRQGELKTEAEAESTASDFIDDEQGVNSTDEALQGAQDIIAEQISETVDNR
HCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
RDVKEIAAPETYLETQLKDQAQDENKVYQDYYDYRENLKKMPLHRAMAINRGEKEGVLKV
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCEEEE
SLSSPEERIIDKVALRELVSLENAGFSRELVFEAVKDACKRLIIPSIQRELRTSKTEQAE
ECCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EHAIKIFSQNLERLLMQPPIKGKNVMGIDPAYKSGCKIAVVDYKGDMQEVDVIYPTPPFN
HHHHHHHHHHHHHHHHCCCCCCCCEECCCHHHHCCCEEEEEECCCCCCCCCEEECCCCCC
KTEQAAKKVISLLNKYQVEIIAIGNGTASRETEEFVSETIEDVELSLEVQYAIVSEDGAS
HHHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHHEEEEEEEEEECCCCH
VYSASKLAAEEFPELDVQERSAISIARRVIDPLAELVKIDPKSIGVGQYQHDVPQSKLKE
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHH
AVQFVVEKVVNQVGVDVNTASVHLLRYISGLNKKSAENMVNTRSELGGFDSRAQLTEVKG
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHC
LGAKTFEQCAGFLRILDGSNPLDKTAIHPESYHIAEGIIAHLNEVPENIGSEALRTGVDS
CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLNNKNQIQSLCQEFDTDKYTLEDILTGLKKPLYDPREEFDKPRLKKDVMKLEDLSEGMI
HHCCHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHHHCCCCCE
LEGEIRNVVDFGAFVDLGIKEDGLIHISNLSEKFVKHPMEIVSVGDVVQVEIVSIDKDRG
EECHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHCCHHHHCCCCEEEEEEEEEECCCC
RIGLKKV
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]