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The map label for this gene is (hspc4-1 [H]

Identifier: 188585215

GI number: 188585215

Start: 605834

End: 606268

Strand: Reverse

Name: (hspc4-1 [H]

Synonym: Nther_0577

Alternate gene names: 188585215

Gene position: 606268-605834 (Counterclockwise)

Preceding gene: 188585219

Following gene: 188585213

Centisome position: 19.15

GC content: 37.24

Gene sequence:

>435_bases
GTGGTGAGATACGCTGATAGCGGTAAAAATTTATTCAATTGGACACCTGGTTTTGGAGTTCTAAATCCACCGGCAGAAGA
ACTTGTTAAAACGGGTTTCGGTGGAGCTGATATCTATAAAAAAGATAGAGAGTTAAATTTCGATATCGTACTTCCGGGAC
TTAACAAGGAAGATATAAATGTCCGAGTAGAAAATAATTATCTAGTAGTCAAAGGAGAACTCAAAAAGAGTGAACAAGTA
GAACAAGAGAACTATTTAATGGTAGAAAGACAGTCAGGGCTGTTTCAAAGAAATTACCCAATCCCAGAAGAGGTAGATAT
GGGTAGTTTAAATCATATTACGGCCACCTATGATAAAGGTATCCTGAACGTCAAACTACCTCTCAAAAATGAGCCTAACA
GCCATGGTGACTCCCATGAAATTGATATTGAATAA

Upstream 100 bases:

>100_bases
AAAGGATTGCCTCCTGCTATATAAAAACGAAAGCTAAAAGTTAACACTATTAATGTCAATATTAATTTATCTATCAATCA
ATCATTGAAGGAGGTATTCA

Downstream 100 bases:

>100_bases
CTTGCTAACTACCAATCTCTAAAATGATTTATTTTATCCTGATAATGTTCAGTCAATTGTTCAAGCTTTTCTAAATCATG
GTTCTCTAAAGGTGAAAAAT

Product: heat shock protein Hsp20

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 144; Mature: 144

Protein sequence:

>144_residues
MVRYADSGKNLFNWTPGFGVLNPPAEELVKTGFGGADIYKKDRELNFDIVLPGLNKEDINVRVENNYLVVKGELKKSEQV
EQENYLMVERQSGLFQRNYPIPEEVDMGSLNHITATYDKGILNVKLPLKNEPNSHGDSHEIDIE

Sequences:

>Translated_144_residues
MVRYADSGKNLFNWTPGFGVLNPPAEELVKTGFGGADIYKKDRELNFDIVLPGLNKEDINVRVENNYLVVKGELKKSEQV
EQENYLMVERQSGLFQRNYPIPEEVDMGSLNHITATYDKGILNVKLPLKNEPNSHGDSHEIDIE
>Mature_144_residues
MVRYADSGKNLFNWTPGFGVLNPPAEELVKTGFGGADIYKKDRELNFDIVLPGLNKEDINVRVENNYLVVKGELKKSEQV
EQENYLMVERQSGLFQRNYPIPEEVDMGSLNHITATYDKGILNVKLPLKNEPNSHGDSHEIDIE

Specific function: Unknown

COG id: COG0071

COG function: function code O; Molecular chaperone (small heat shock protein)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the small heat shock protein (HSP20) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002068
- InterPro:   IPR008978 [H]

Pfam domain/function: PF00011 HSP20 [H]

EC number: NA

Molecular weight: Translated: 16350; Mature: 16350

Theoretical pI: Translated: 4.62; Mature: 4.62

Prosite motif: PS01031 HSP20

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVRYADSGKNLFNWTPGFGVLNPPAEELVKTGFGGADIYKKDRELNFDIVLPGLNKEDIN
CCEECCCCCCEEEECCCCCCCCCCHHHHHHCCCCCCCEEECCCCCCEEEEECCCCCCCEE
VRVENNYLVVKGELKKSEQVEQENYLMVERQSGLFQRNYPIPEEVDMGSLNHITATYDKG
EEECCCEEEEECCCCCCCCCCCCCEEEEECCCCCEECCCCCCCCCCCCCCCEEEEECCCC
ILNVKLPLKNEPNSHGDSHEIDIE
EEEEEECCCCCCCCCCCCEEEECC
>Mature Secondary Structure
MVRYADSGKNLFNWTPGFGVLNPPAEELVKTGFGGADIYKKDRELNFDIVLPGLNKEDIN
CCEECCCCCCEEEECCCCCCCCCCHHHHHHCCCCCCCEEECCCCCCEEEEECCCCCCCEE
VRVENNYLVVKGELKKSEQVEQENYLMVERQSGLFQRNYPIPEEVDMGSLNHITATYDKG
EEECCCEEEEECCCCCCCCCCCCCEEEEECCCCCEECCCCCCCCCCCCCCCEEEEECCCC
ILNVKLPLKNEPNSHGDSHEIDIE
EEEEEECCCCCCCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA