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The map label for this gene is radC [C]

Identifier: 188585153

GI number: 188585153

Start: 537139

End: 537864

Strand: Direct

Name: radC [C]

Synonym: Nther_0514

Alternate gene names: 188585153

Gene position: 537139-537864 (Clockwise)

Preceding gene: 188585152

Following gene: 188585154

Centisome position: 16.97

GC content: 35.67

Gene sequence:

>726_bases
TTGGAAGTTGACTATAATTTTAGAGGTGAGGGCGTGAAAAAAACACCATATAGGACAATTAAATCTCTCCCAGAAGCTGA
TCGTCCTAGGGAGAGATTTTTAAAACTGGGGCCCGAAGCTATTTCCGATTCTGAATTGATTGCTATAATTTTAGGTACTG
GCACTAAACAAAGCTCGGCTTTAGACCTGGCAAATTCTATTCTTTCAAATTATGTGAGTATTTTTAACCTTTTACAGGCA
ACTATCTCTGAATTATGTGAAATTCCAGGGATTGGTTATGCAAAATCAATTAAATTGAAAGCAGCCTTTGAATTAGCTAA
CAGATGTATGGCTAGAGAACAATTGACCATGGACAAAATTACAAGCCCCGAAGATATTTTTCGGCTGATGAATTTTAGGT
TAAAAACCGAAACTAGAGAACACTTTCTGGCAGTAATGCTAAATACCAAAAGTTATCTATTAAAAATAGATTTGATATCT
ATAGGAAGCTTAAATGCAACAATAGTTCATCCACGTGAAGTCTTTAATAGGGCGATTAGAGCTTCAGCTTGCGGCGTTAT
ACTAGTTCATAATCATCCTAGTGGTGATCCTGAACCAAGTCAAGATGATATCAAATTAACAAATCGGTTGGTGGCAGCTG
GTGATTTACTTGGAATACCTATCATGGATCACGTTATTATTGGTCATCAAAAGTTTTATAGTTTTTCCAGAGAAAATCAC
TTATGA

Upstream 100 bases:

>100_bases
AAGATTTACGGCTGTTATTATAATGTGGTAGGTCTTCCGCTGTCTGTGCTTGCTAAAATGCTGGAAGCCTTTGGTGTACA
GGTACTCAAGTAGTTGGAAT

Downstream 100 bases:

>100_bases
CATATCATACCTATTGCTATTTTGAAACAAAGATTGGTATAATTTAATTTAGCTATAACTGGGCTAATAAAAGCGTAAAA
ATATTATCTTAATCTCCCGA

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 241; Mature: 241

Protein sequence:

>241_residues
MEVDYNFRGEGVKKTPYRTIKSLPEADRPRERFLKLGPEAISDSELIAIILGTGTKQSSALDLANSILSNYVSIFNLLQA
TISELCEIPGIGYAKSIKLKAAFELANRCMAREQLTMDKITSPEDIFRLMNFRLKTETREHFLAVMLNTKSYLLKIDLIS
IGSLNATIVHPREVFNRAIRASACGVILVHNHPSGDPEPSQDDIKLTNRLVAAGDLLGIPIMDHVIIGHQKFYSFSRENH
L

Sequences:

>Translated_241_residues
MEVDYNFRGEGVKKTPYRTIKSLPEADRPRERFLKLGPEAISDSELIAIILGTGTKQSSALDLANSILSNYVSIFNLLQA
TISELCEIPGIGYAKSIKLKAAFELANRCMAREQLTMDKITSPEDIFRLMNFRLKTETREHFLAVMLNTKSYLLKIDLIS
IGSLNATIVHPREVFNRAIRASACGVILVHNHPSGDPEPSQDDIKLTNRLVAAGDLLGIPIMDHVIIGHQKFYSFSRENH
L
>Mature_241_residues
MEVDYNFRGEGVKKTPYRTIKSLPEADRPRERFLKLGPEAISDSELIAIILGTGTKQSSALDLANSILSNYVSIFNLLQA
TISELCEIPGIGYAKSIKLKAAFELANRCMAREQLTMDKITSPEDIFRLMNFRLKTETREHFLAVMLNTKSYLLKIDLIS
IGSLNATIVHPREVFNRAIRASACGVILVHNHPSGDPEPSQDDIKLTNRLVAAGDLLGIPIMDHVIIGHQKFYSFSRENH
L

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI87082300, Length=208, Percent_Identity=35.5769230769231, Blast_Score=144, Evalue=8e-36,
Organism=Escherichia coli, GI1788997, Length=154, Percent_Identity=35.0649350649351, Blast_Score=98, Evalue=5e-22,
Organism=Escherichia coli, GI2367100, Length=117, Percent_Identity=39.3162393162393, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1788312, Length=98, Percent_Identity=42.8571428571429, Blast_Score=87, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010994
- InterPro:   IPR001405 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 26953; Mature: 26953

Theoretical pI: Translated: 8.10; Mature: 8.10

Prosite motif: PS01302 RADC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEVDYNFRGEGVKKTPYRTIKSLPEADRPRERFLKLGPEAISDSELIAIILGTGTKQSSA
CCCCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCEEEEEEECCCCCHHH
LDLANSILSNYVSIFNLLQATISELCEIPGIGYAKSIKLKAAFELANRCMAREQLTMDKI
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
TSPEDIFRLMNFRLKTETREHFLAVMLNTKSYLLKIDLISIGSLNATIVHPREVFNRAIR
CCHHHHHHHHHHHHHHHHHHHEEEEEECCCEEEEEEEEEEECCCCEEEECHHHHHHHHHH
ASACGVILVHNHPSGDPEPSQDDIKLTNRLVAAGDLLGIPIMDHVIIGHQKFYSFSRENH
HHHCCEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCC
L
C
>Mature Secondary Structure
MEVDYNFRGEGVKKTPYRTIKSLPEADRPRERFLKLGPEAISDSELIAIILGTGTKQSSA
CCCCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCEEEEEEECCCCCHHH
LDLANSILSNYVSIFNLLQATISELCEIPGIGYAKSIKLKAAFELANRCMAREQLTMDKI
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
TSPEDIFRLMNFRLKTETREHFLAVMLNTKSYLLKIDLISIGSLNATIVHPREVFNRAIR
CCHHHHHHHHHHHHHHHHHHHEEEEEECCCEEEEEEEEEEECCCCEEEECHHHHHHHHHH
ASACGVILVHNHPSGDPEPSQDDIKLTNRLVAAGDLLGIPIMDHVIIGHQKFYSFSRENH
HHHCCEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCC
L
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA