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The map label for this gene is rnfE [H]

Identifier: 188585136

GI number: 188585136

Start: 525561

End: 526181

Strand: Direct

Name: rnfE [H]

Synonym: Nther_0497

Alternate gene names: 188585136

Gene position: 525561-526181 (Clockwise)

Preceding gene: 188585135

Following gene: 188585137

Centisome position: 16.6

GC content: 40.1

Gene sequence:

>621_bases
TTGAAATTTAGTGAAGCTTTTACGCAAGGTTTACTAAAAGAAAATGGTTTGTATAGGCAACTTTTAGGACTGTGCCCAGC
CTTGGCTGTTACACAAACTGCTATGAATAGCTTGGGTTTAGGTGCCGCTACAATGGCTGTTTTGCTTGCTGCCAATATAG
TGATTTCTTTAGTTAAAAATCTTATTCCCAAAAAAATAAGAATTCCTTCATATATAGTCATTATAGCAACCTTTGTTACT
ATAGTAGACATGTTCTTAGAAGCTTTCACACCGGATCTTCACGCTGCTTTGGGAATATTTATTCCATTAATTGTCACCAA
CTGCTTAATCTTGGGACGAGCTGAGGCCTTTGCCTCCAAAGAAAAAGTAACTTCAGCCATTGGAGACGCTTTGGGTATGG
GTATTGGCTTTACCTTGGGGTTACTGTCCCTAGGAGTAGTTAGAGAGCTATTCGGTAAAGGTAGCTTGTTTGGTTGGCCT
GTACTCCATGAACTATTCGGGGCTTTTGGATTAGAATTTCAGCCAGCCTTGATTTTCATCCAACCAGCTGGTGCATTCTT
TGCCCTAGGTATCCTTCTAGCCCTAATGAATATAGTCTACAAGCGTTTGCAGTATGATTAA

Upstream 100 bases:

>100_bases
CTGTAATAGAAGGTGTCGAATTGGCCCTTGACAATATAGTTGAAGATTATTTAGGAAACTAATGAAAACTGACTAAATGC
AGGAAACGGGGGTGACTTTA

Downstream 100 bases:

>100_bases
TAAGAAACGGCTGCTATTACTTAAAGTACCTTGTAAGTCGATATAGTAATACAGGGAGAGTAAGTGATTACTGAGTTGGT
AGTAACTAGAGTGGAAAGGG

Product: electron transport complex, RnfABCDGE type, E subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 206; Mature: 206

Protein sequence:

>206_residues
MKFSEAFTQGLLKENGLYRQLLGLCPALAVTQTAMNSLGLGAATMAVLLAANIVISLVKNLIPKKIRIPSYIVIIATFVT
IVDMFLEAFTPDLHAALGIFIPLIVTNCLILGRAEAFASKEKVTSAIGDALGMGIGFTLGLLSLGVVRELFGKGSLFGWP
VLHELFGAFGLEFQPALIFIQPAGAFFALGILLALMNIVYKRLQYD

Sequences:

>Translated_206_residues
MKFSEAFTQGLLKENGLYRQLLGLCPALAVTQTAMNSLGLGAATMAVLLAANIVISLVKNLIPKKIRIPSYIVIIATFVT
IVDMFLEAFTPDLHAALGIFIPLIVTNCLILGRAEAFASKEKVTSAIGDALGMGIGFTLGLLSLGVVRELFGKGSLFGWP
VLHELFGAFGLEFQPALIFIQPAGAFFALGILLALMNIVYKRLQYD
>Mature_206_residues
MKFSEAFTQGLLKENGLYRQLLGLCPALAVTQTAMNSLGLGAATMAVLLAANIVISLVKNLIPKKIRIPSYIVIIATFVT
IVDMFLEAFTPDLHAALGIFIPLIVTNCLILGRAEAFASKEKVTSAIGDALGMGIGFTLGLLSLGVVRELFGKGSLFGWP
VLHELFGAFGLEFQPALIFIQPAGAFFALGILLALMNIVYKRLQYD

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4660

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfE

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrDE/rnfAE family [H]

Homologues:

Organism=Escherichia coli, GI1787919, Length=211, Percent_Identity=42.1800947867299, Blast_Score=142, Evalue=2e-35,
Organism=Escherichia coli, GI1787914, Length=113, Percent_Identity=36.283185840708, Blast_Score=65, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003667
- InterPro:   IPR010968 [H]

Pfam domain/function: PF02508 Rnf-Nqr [H]

EC number: NA

Molecular weight: Translated: 22092; Mature: 22092

Theoretical pI: Translated: 8.70; Mature: 8.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFSEAFTQGLLKENGLYRQLLGLCPALAVTQTAMNSLGLGAATMAVLLAANIVISLVKN
CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
LIPKKIRIPSYIVIIATFVTIVDMFLEAFTPDLHAALGIFIPLIVTNCLILGRAEAFASK
HCCCHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EKVTSAIGDALGMGIGFTLGLLSLGVVRELFGKGSLFGWPVLHELFGAFGLEFQPALIFI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCEEEEE
QPAGAFFALGILLALMNIVYKRLQYD
ECCHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKFSEAFTQGLLKENGLYRQLLGLCPALAVTQTAMNSLGLGAATMAVLLAANIVISLVKN
CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
LIPKKIRIPSYIVIIATFVTIVDMFLEAFTPDLHAALGIFIPLIVTNCLILGRAEAFASK
HCCCHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EKVTSAIGDALGMGIGFTLGLLSLGVVRELFGKGSLFGWPVLHELFGAFGLEFQPALIFI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCEEEEE
QPAGAFFALGILLALMNIVYKRLQYD
ECCHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA