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The map label for this gene is yefB [H]

Identifier: 188585033

GI number: 188585033

Start: 409837

End: 411462

Strand: Direct

Name: yefB [H]

Synonym: Nther_0394

Alternate gene names: 188585033

Gene position: 409837-411462 (Clockwise)

Preceding gene: 188585031

Following gene: 188585038

Centisome position: 12.95

GC content: 30.2

Gene sequence:

>1626_bases
ATGGTTACTACAATAAAATATGCAAAATATATGCGTTACTCAAGGGTAGATGGTGATAGAGAGAAAGAAAGTATTCAAAA
TCAGGATAAAATAATTGAAAACTATATCAAAGATCGTGAAACTAAATATAATGAGAAATGGTTGTTAGTAGGAGAATATG
TGGACCTAGATTATACTGGCTCAAACTTTAATAGACCTGAATTTTTAAAAATGAAGGAAGAAGTTGAAAATGATAAAATT
GATGTAATAATATCGAAAGATGCGTCCAGGTTTGGAAGAAACGTGGCAACAGAGGTTTATTTTGAAGAAATATTTCCAAA
ATACAGGACACGATTTATTGGAGTGGTTGATAATGTAGATACTGCTTCTGAAAACCAGGCTTTTGAAAGAAAGATAAGAG
GATTAATGAATGAGAACTATTGTAGTGATATTTCACAAAAGGTTAAAAGCTCGCTAAAAACTAAAATGATTGAGGGTAAA
TTTATAGGGGCTTCTCCACCTTATGGATTTGAACGAGACCTTGATGATAAGCATAAGTTAATTGTTGATGAAGAGGTCAG
ACCTATAATATTGAAAATAGTGGATTTATATTTAAAAGGTTATGGGTTTTCAGCTATAGCTAAAATATTAAATGCTGAAA
AAATACCATCACCTTCTGCTTATAAAAAAATGAAAAAATCAAACTATAAAAATCCAAGAGCTAATAGGAGGTTGTGGAGT
CCTTCAACTATTAGGAAAATTTTAACAGAACCTATTTATAATGGCACACTCGTACAGGGAAAGCATCCAAAAATTAACTA
TAAAATTAATAGTAGAAAAAAAAGTGGAGAGTCTGAGTTAATCAAAGTAGATAATGCAGTTGAGAAAATTATTGACGATG
AAACATTTGAGTTAGTTGGGAAAAAAATTAATAGTAGAAGTAAAAATGTTAAGAATAATGACTCTCCGAGTGTTTTACCA
GATAATGTGTATTCAGGACTTGTATATTGTGAGGATTGTGGCTCAAAGATGGTATATAGAAGTGATAGGGATATGTATAT
GTGCGGTACCTATGCTAAATATGGGAAGAAATACTGCTCCAATCATAATATCAAAACAAAAGTTATAAATGAAGTGGTCA
TAGAGCAATTAAATTTGATTATTAAGCTTACAATTGATATTAGAACTCTTTTGAACGATATAAAAAAGAAATACCAAGAA
GTAAGTGGTAAGGATGTTATTGAAATTAAAAGAAAAAAGCGTGAAAATCGCCTAAAAACTTTAAAAGAATCTTTAAAAAT
TTTAAGGGAAGAGTATGCAGATGGTATAATTGACCAAGAGGAATATAAAGAGACTAGGTCTGAATATGTAAATGAAATTA
ATACCATAGAAAATGAACTGGGGAAATTACAAGTTTCATCAAGCAAAGAATCTGTAATTAATGATTGGGAGGAGAAAGTT
AAGGACTTAGAAAAGTTTTATAATAACTTTCTGAAAATTAACAAAATAGATAGAGAAATAGCTTTAAAACTTATAGATAC
CATAACTGTAGGAACCGACCAAATATCTGAAATCAAATTCGCTGGAGCTTCGCCATTTGAATTAGCTCAAGAATTGAAAT
CTGAAATATCAAGTGTGGCACTATGA

Upstream 100 bases:

>100_bases
TAGCTTTTAATGAAAGTAAAACGCCTATTGATGAGTTGATTCACAAATATTTTGTTGAAAAATATGGTAGTGCTTAAAAT
TTTAGAAAAGGAGGTGCAGC

Downstream 100 bases:

>100_bases
TAAAAAGTGGCAGTATTTTCGCTGCCACTTTTATTTCTATTTCGAAATAGTTTAAATCCTTAATAGGGTTTTAGGAGCTA
TATTAATGAGTGTGTAATAA

Product: Recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 541; Mature: 541

Protein sequence:

>541_residues
MVTTIKYAKYMRYSRVDGDREKESIQNQDKIIENYIKDRETKYNEKWLLVGEYVDLDYTGSNFNRPEFLKMKEEVENDKI
DVIISKDASRFGRNVATEVYFEEIFPKYRTRFIGVVDNVDTASENQAFERKIRGLMNENYCSDISQKVKSSLKTKMIEGK
FIGASPPYGFERDLDDKHKLIVDEEVRPIILKIVDLYLKGYGFSAIAKILNAEKIPSPSAYKKMKKSNYKNPRANRRLWS
PSTIRKILTEPIYNGTLVQGKHPKINYKINSRKKSGESELIKVDNAVEKIIDDETFELVGKKINSRSKNVKNNDSPSVLP
DNVYSGLVYCEDCGSKMVYRSDRDMYMCGTYAKYGKKYCSNHNIKTKVINEVVIEQLNLIIKLTIDIRTLLNDIKKKYQE
VSGKDVIEIKRKKRENRLKTLKESLKILREEYADGIIDQEEYKETRSEYVNEINTIENELGKLQVSSSKESVINDWEEKV
KDLEKFYNNFLKINKIDREIALKLIDTITVGTDQISEIKFAGASPFELAQELKSEISSVAL

Sequences:

>Translated_541_residues
MVTTIKYAKYMRYSRVDGDREKESIQNQDKIIENYIKDRETKYNEKWLLVGEYVDLDYTGSNFNRPEFLKMKEEVENDKI
DVIISKDASRFGRNVATEVYFEEIFPKYRTRFIGVVDNVDTASENQAFERKIRGLMNENYCSDISQKVKSSLKTKMIEGK
FIGASPPYGFERDLDDKHKLIVDEEVRPIILKIVDLYLKGYGFSAIAKILNAEKIPSPSAYKKMKKSNYKNPRANRRLWS
PSTIRKILTEPIYNGTLVQGKHPKINYKINSRKKSGESELIKVDNAVEKIIDDETFELVGKKINSRSKNVKNNDSPSVLP
DNVYSGLVYCEDCGSKMVYRSDRDMYMCGTYAKYGKKYCSNHNIKTKVINEVVIEQLNLIIKLTIDIRTLLNDIKKKYQE
VSGKDVIEIKRKKRENRLKTLKESLKILREEYADGIIDQEEYKETRSEYVNEINTIENELGKLQVSSSKESVINDWEEKV
KDLEKFYNNFLKINKIDREIALKLIDTITVGTDQISEIKFAGASPFELAQELKSEISSVAL
>Mature_541_residues
MVTTIKYAKYMRYSRVDGDREKESIQNQDKIIENYIKDRETKYNEKWLLVGEYVDLDYTGSNFNRPEFLKMKEEVENDKI
DVIISKDASRFGRNVATEVYFEEIFPKYRTRFIGVVDNVDTASENQAFERKIRGLMNENYCSDISQKVKSSLKTKMIEGK
FIGASPPYGFERDLDDKHKLIVDEEVRPIILKIVDLYLKGYGFSAIAKILNAEKIPSPSAYKKMKKSNYKNPRANRRLWS
PSTIRKILTEPIYNGTLVQGKHPKINYKINSRKKSGESELIKVDNAVEKIIDDETFELVGKKINSRSKNVKNNDSPSVLP
DNVYSGLVYCEDCGSKMVYRSDRDMYMCGTYAKYGKKYCSNHNIKTKVINEVVIEQLNLIIKLTIDIRTLLNDIKKKYQE
VSGKDVIEIKRKKRENRLKTLKESLKILREEYADGIIDQEEYKETRSEYVNEINTIENELGKLQVSSSKESVINDWEEKV
KDLEKFYNNFLKINKIDREIALKLIDTITVGTDQISEIKFAGASPFELAQELKSEISSVAL

Specific function: Unknown

COG id: COG1961

COG function: function code L; Site-specific recombinases, DNA invertase Pin homologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 recombinase domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013831
- InterPro:   IPR011109 [H]

Pfam domain/function: PF07508 Recombinase [H]

EC number: NA

Molecular weight: Translated: 62770; Mature: 62770

Theoretical pI: Translated: 9.21; Mature: 9.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVTTIKYAKYMRYSRVDGDREKESIQNQDKIIENYIKDRETKYNEKWLLVGEYVDLDYTG
CCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECC
SNFNRPEFLKMKEEVENDKIDVIISKDASRFGRNVATEVYFEEIFPKYRTRFIGVVDNVD
CCCCCCHHHHHHHHCCCCCEEEEEECCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
TASENQAFERKIRGLMNENYCSDISQKVKSSLKTKMIEGKFIGASPPYGFERDLDDKHKL
CCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCE
IVDEEVRPIILKIVDLYLKGYGFSAIAKILNAEKIPSPSAYKKMKKSNYKNPRANRRLWS
EECCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCC
PSTIRKILTEPIYNGTLVQGKHPKINYKINSRKKSGESELIKVDNAVEKIIDDETFELVG
HHHHHHHHHCCCCCCEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCHHHHHHH
KKINSRSKNVKNNDSPSVLPDNVYSGLVYCEDCGSKMVYRSDRDMYMCGTYAKYGKKYCS
HHHHCCCCCCCCCCCCCCCCCHHHHCCEEEECCCCCCEEECCCCEEEECCHHHHHHHHHC
NHNIKTKVINEVVIEQLNLIIKLTIDIRTLLNDIKKKYQEVSGKDVIEIKRKKRENRLKT
CCCCHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
LKESLKILREEYADGIIDQEEYKETRSEYVNEINTIENELGKLQVSSSKESVINDWEEKV
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEECCCHHHHHHHHHHHH
KDLEKFYNNFLKINKIDREIALKLIDTITVGTDQISEIKFAGASPFELAQELKSEISSVA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHEECCCCHHHHHHHHHHHHHHCC
L
C
>Mature Secondary Structure
MVTTIKYAKYMRYSRVDGDREKESIQNQDKIIENYIKDRETKYNEKWLLVGEYVDLDYTG
CCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECC
SNFNRPEFLKMKEEVENDKIDVIISKDASRFGRNVATEVYFEEIFPKYRTRFIGVVDNVD
CCCCCCHHHHHHHHCCCCCEEEEEECCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
TASENQAFERKIRGLMNENYCSDISQKVKSSLKTKMIEGKFIGASPPYGFERDLDDKHKL
CCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCE
IVDEEVRPIILKIVDLYLKGYGFSAIAKILNAEKIPSPSAYKKMKKSNYKNPRANRRLWS
EECCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCC
PSTIRKILTEPIYNGTLVQGKHPKINYKINSRKKSGESELIKVDNAVEKIIDDETFELVG
HHHHHHHHHCCCCCCEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCHHHHHHH
KKINSRSKNVKNNDSPSVLPDNVYSGLVYCEDCGSKMVYRSDRDMYMCGTYAKYGKKYCS
HHHHCCCCCCCCCCCCCCCCCHHHHCCEEEECCCCCCEEECCCCEEEECCHHHHHHHHHC
NHNIKTKVINEVVIEQLNLIIKLTIDIRTLLNDIKKKYQEVSGKDVIEIKRKKRENRLKT
CCCCHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
LKESLKILREEYADGIIDQEEYKETRSEYVNEINTIENELGKLQVSSSKESVINDWEEKV
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEECCCHHHHHHHHHHHH
KDLEKFYNNFLKINKIDREIALKLIDTITVGTDQISEIKFAGASPFELAQELKSEISSVA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHEECCCCHHHHHHHHHHHHHHCC
L
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]