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The map label for this gene is ybaF [H]

Identifier: 188584977

GI number: 188584977

Start: 352937

End: 353707

Strand: Direct

Name: ybaF [H]

Synonym: Nther_0337

Alternate gene names: 188584977

Gene position: 352937-353707 (Clockwise)

Preceding gene: 188584976

Following gene: 188584978

Centisome position: 11.15

GC content: 35.93

Gene sequence:

>771_bases
GTGACACACGAACAAGTGCAGAACAATCAATATGATCCCAGGACTAAACTATTTATAGTAATGTGTCTCTCCAGCTTGGC
AGTGTTTCTAGAAGATTTAGTATTGATGACAGGAGTGTTGATTGTAGCCCTTGGTATATCATTTTATTTCCAGAGTGAAG
TTCTAAAGGCAATTTATAAGCTCAGAAAATTTTTGTGGATTTTTGTTGCCATGGTTTTTATTCAAAGTATTTTCACCTCT
GGAGGAGAAGAGTTATTTAGTATCGGTGATATTACTGTTCTTTCCTCCTTAGGGGTTACCAGGGGTATATCCATAATTCT
CAGGATTATGATTATACTTGTATCAGCCACTATTATGGGTACTTCCAGCTCAAGGGATATCGTTCAAGGTCTCTATCAAT
GGAAAATTCCTTATGAATTAGCGTTTATGGTTGCCATAGCAATAAGATTTTTGCCATTGTTAAAAGAAGAAGCAGTTGAT
ATAATCACTGCTATTCAGTTACGAGGACTAGAATTAGAAAAAGTCCCATGGGGCAAAAAAATTAAAATTTATTCCTACCT
GATAATGCCAATGATATCAAGTGTTATCGTGAAATCCAGGGAACTGGCCATAGCCGTAGAAATGAGAGGTTTCAGAGCTT
ATCCAACTCGGACAAGTTATCGGGTATTACATTTATCTATAAAAGATTATGCAGTGATGTTTTCTGCAGGTTTGATAACT
GCAGCTATATTATCAATTTATTTCGGGGACTTTATTAACTTAGCAGGGTAA

Upstream 100 bases:

>100_bases
TTAGATAACGATGTTGGTATGCTGATTATAAGTCATGATTACGAATTTGTTACTCAATATGCTGATAGGATTATTAAGAT
AGCTGGAGGTGAGATTATTA

Downstream 100 bases:

>100_bases
GGGGGTATAACATGAGAGTACTATCAGTTGCAGGTATTACAGGATCTGGTAAAACAACAATTATTGAAAATATTATTACT
GAATTAACAAAAAGACGGTA

Product: cobalt transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 256; Mature: 255

Protein sequence:

>256_residues
MTHEQVQNNQYDPRTKLFIVMCLSSLAVFLEDLVLMTGVLIVALGISFYFQSEVLKAIYKLRKFLWIFVAMVFIQSIFTS
GGEELFSIGDITVLSSLGVTRGISIILRIMIILVSATIMGTSSSRDIVQGLYQWKIPYELAFMVAIAIRFLPLLKEEAVD
IITAIQLRGLELEKVPWGKKIKIYSYLIMPMISSVIVKSRELAIAVEMRGFRAYPTRTSYRVLHLSIKDYAVMFSAGLIT
AAILSIYFGDFINLAG

Sequences:

>Translated_256_residues
MTHEQVQNNQYDPRTKLFIVMCLSSLAVFLEDLVLMTGVLIVALGISFYFQSEVLKAIYKLRKFLWIFVAMVFIQSIFTS
GGEELFSIGDITVLSSLGVTRGISIILRIMIILVSATIMGTSSSRDIVQGLYQWKIPYELAFMVAIAIRFLPLLKEEAVD
IITAIQLRGLELEKVPWGKKIKIYSYLIMPMISSVIVKSRELAIAVEMRGFRAYPTRTSYRVLHLSIKDYAVMFSAGLIT
AAILSIYFGDFINLAG
>Mature_255_residues
THEQVQNNQYDPRTKLFIVMCLSSLAVFLEDLVLMTGVLIVALGISFYFQSEVLKAIYKLRKFLWIFVAMVFIQSIFTSG
GEELFSIGDITVLSSLGVTRGISIILRIMIILVSATIMGTSSSRDIVQGLYQWKIPYELAFMVAIAIRFLPLLKEEAVDI
ITAIQLRGLELEKVPWGKKIKIYSYLIMPMISSVIVKSRELAIAVEMRGFRAYPTRTSYRVLHLSIKDYAVMFSAGLITA
AILSIYFGDFINLAG

Specific function: Unknown

COG id: COG0619

COG function: function code P; ABC-type cobalt transport system, permease component CbiQ and related transporters

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CbiQ family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003339 [H]

Pfam domain/function: PF02361 CbiQ [H]

EC number: NA

Molecular weight: Translated: 28819; Mature: 28688

Theoretical pI: Translated: 9.57; Mature: 9.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTHEQVQNNQYDPRTKLFIVMCLSSLAVFLEDLVLMTGVLIVALGISFYFQSEVLKAIYK
CCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LRKFLWIFVAMVFIQSIFTSGGEELFSIGDITVLSSLGVTRGISIILRIMIILVSATIMG
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHC
TSSSRDIVQGLYQWKIPYELAFMVAIAIRFLPLLKEEAVDIITAIQLRGLELEKVPWGKK
CCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCC
IKIYSYLIMPMISSVIVKSRELAIAVEMRGFRAYPTRTSYRVLHLSIKDYAVMFSAGLIT
HHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCCCCCEEEEEEEHHHHHHHHHHHHHH
AAILSIYFGDFINLAG
HHHHHHHHHHHHHCCC
>Mature Secondary Structure 
THEQVQNNQYDPRTKLFIVMCLSSLAVFLEDLVLMTGVLIVALGISFYFQSEVLKAIYK
CCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LRKFLWIFVAMVFIQSIFTSGGEELFSIGDITVLSSLGVTRGISIILRIMIILVSATIMG
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHC
TSSSRDIVQGLYQWKIPYELAFMVAIAIRFLPLLKEEAVDIITAIQLRGLELEKVPWGKK
CCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCC
IKIYSYLIMPMISSVIVKSRELAIAVEMRGFRAYPTRTSYRVLHLSIKDYAVMFSAGLIT
HHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCCCCCEEEEEEEHHHHHHHHHHHHHH
AAILSIYFGDFINLAG
HHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]