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The map label for this gene is cspC [H]

Identifier: 188584960

GI number: 188584960

Start: 336297

End: 336503

Strand: Direct

Name: cspC [H]

Synonym: Nther_0320

Alternate gene names: 188584960

Gene position: 336297-336503 (Clockwise)

Preceding gene: 188584958

Following gene: 188584961

Centisome position: 10.62

GC content: 40.58

Gene sequence:

>207_bases
ATGAGAGGAACTGTTAAATGGTTCGATCCTAAAAAAGGTTATGGTTTTATTGAGAAGGAAGATGATGGAGAAGATGTTTT
TGTCCACTTTTCAGCCATTCAACAAGAAGGCTTTAAGACCCTAGAAGAGGGTCAAAAAGTGGAGTTTGAAGTTACCCAAG
GGGACAAGGGACCCCAAGCTGAAAATGTTGTAGTCATGGAAGGTTAG

Upstream 100 bases:

>100_bases
TCTCTAAAATTTCATGATTTTCCTTTGAAAATGTATTATTTTAGCTTTTTTGGTTAAGAGTAAGTAACAGAACACTGGTT
AAGGAGGAAAGTTAATAACG

Downstream 100 bases:

>100_bases
ATGATCTAACCGGCAGTAGGACAGGAACAAGCTGTCCTACTGTTTATTTTTATATCGATTGTATTAAAGCTTGAATGTTG
ATAACTGTAAAATTTCAATT

Product: cold-shock DNA-binding protein family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 68; Mature: 68

Protein sequence:

>68_residues
MRGTVKWFDPKKGYGFIEKEDDGEDVFVHFSAIQQEGFKTLEEGQKVEFEVTQGDKGPQAENVVVMEG

Sequences:

>Translated_68_residues
MRGTVKWFDPKKGYGFIEKEDDGEDVFVHFSAIQQEGFKTLEEGQKVEFEVTQGDKGPQAENVVVMEG
>Mature_68_residues
MRGTVKWFDPKKGYGFIEKEDDGEDVFVHFSAIQQEGFKTLEEGQKVEFEVTQGDKGPQAENVVVMEG

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Homo sapiens, GI224586882, Length=70, Percent_Identity=45.7142857142857, Blast_Score=66, Evalue=7e-12,
Organism=Homo sapiens, GI224586884, Length=70, Percent_Identity=45.7142857142857, Blast_Score=66, Evalue=7e-12,
Organism=Homo sapiens, GI156415990, Length=66, Percent_Identity=46.969696969697, Blast_Score=65, Evalue=1e-11,
Organism=Homo sapiens, GI34098946, Length=66, Percent_Identity=46.969696969697, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1786841, Length=66, Percent_Identity=63.6363636363636, Blast_Score=95, Evalue=7e-22,
Organism=Escherichia coli, GI2367114, Length=66, Percent_Identity=57.5757575757576, Blast_Score=86, Evalue=6e-19,
Organism=Escherichia coli, GI1789979, Length=66, Percent_Identity=57.5757575757576, Blast_Score=85, Evalue=7e-19,
Organism=Escherichia coli, GI1788126, Length=66, Percent_Identity=60.6060606060606, Blast_Score=85, Evalue=9e-19,
Organism=Escherichia coli, GI1787839, Length=67, Percent_Identity=55.2238805970149, Blast_Score=84, Evalue=1e-18,
Organism=Escherichia coli, GI1787834, Length=66, Percent_Identity=59.0909090909091, Blast_Score=84, Evalue=2e-18,
Organism=Escherichia coli, GI1787107, Length=66, Percent_Identity=53.030303030303, Blast_Score=78, Evalue=1e-16,
Organism=Drosophila melanogaster, GI24658520, Length=66, Percent_Identity=43.9393939393939, Blast_Score=62, Evalue=5e-11,
Organism=Drosophila melanogaster, GI24663131, Length=70, Percent_Identity=48.5714285714286, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7698; Mature: 7698

Theoretical pI: Translated: 4.23; Mature: 4.23

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRGTVKWFDPKKGYGFIEKEDDGEDVFVHFSAIQQEGFKTLEEGQKVEFEVTQGDKGPQA
CCCCCCCCCCCCCCCCEECCCCCCEEEEEEEHHHHHCCHHHCCCCEEEEEECCCCCCCCC
ENVVVMEG
CCEEEEEC
>Mature Secondary Structure
MRGTVKWFDPKKGYGFIEKEDDGEDVFVHFSAIQQEGFKTLEEGQKVEFEVTQGDKGPQA
CCCCCCCCCCCCCCCCEECCCCCCEEEEEEEHHHHHCCHHHCCCCEEEEEECCCCCCCCC
ENVVVMEG
CCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12721629 [H]