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The map label for this gene is ypsC [H]

Identifier: 188584928

GI number: 188584928

Start: 299845

End: 300984

Strand: Direct

Name: ypsC [H]

Synonym: Nther_0287

Alternate gene names: 188584928

Gene position: 299845-300984 (Clockwise)

Preceding gene: 188584927

Following gene: 188584929

Centisome position: 9.47

GC content: 39.39

Gene sequence:

>1140_bases
ATGTCTCAATTTGAGTTGATTGCCACTTCTACTTTTGGTTTAGAAGCCTTAGTTAAACAGGAGATTAAGGATTTAGGTTA
TGAAATTGTTTCTGTGGAGAACGGAAAAGTTACTTTTAAAGGCGATGAAAAAGCTATATGTAGAGCAAACTTATGGCTTC
GAACGGCAGATCGGGTAAAGTTGAAAATTGGGGAGTTTACAGCCAAATCCTTTGAAGAATTATTTGAACAGACTTATCAG
CTTCCATGGGAGGAGTTGTTACCACAGAACGCAGAGTTTCCCGTGGAAGGAAAATCGGTTAAATCCCAGCTTTATAGTGT
TCCTAACTGTCAATCCATTGTGAAAAAAGCAGTAGTCAAGAAAATGGGGCAGGCCTACGGCCAAAGTTGGTTTGAGGAAG
ATGGTCCCTTTTATAAAATTGAGGTGGCTTTACTTAAAGATATAGCCACACTAACTATTGATACTAGTGGACCAGGATTA
CATAAAAGAGGCTATCGGGCCCTGGTCAGTCACGCGCCATTAAAAGAAACCTTGGCAGCGGCATTGATCATGCTAGCTCG
GTGGTATCCAGACACTGCTTTGATAGATCCACTTTGCGGTTCGGGAACTATTCCTATAGAAGCTGCTATGATCGGACGTA
ATATCCCACCAGGATTGAACAGAAATTTTTCAGCTTCTTCTTGGCCAATCATCTCAGATAAAATCTGGCAAAATGTAAGA
GAAGAAGGTCAGGACAAGGCCGAATTTGACAAAGAACTAAAGATTTATGGTTCTGATTTTGATGAAGAGATGGTACAACT
GTCTCAAGACAACGCAGAAAAGGTTTTGGGTAAAAATATACCGGAATTTACCTGCATGCCAATTGATAAAATTAGCAGTA
ATGAGGAATACGGCAAGCTAATATGCAATCCACCCTATGGAGAGAGACTAGGTGAAGAGCCGGAAGTTGATGATTTATAC
CGCCAAATGGGTCAAATTTTTAACAAGAGGTTCCCTACTTGGTCTTATTATATACTGACTCCTCATAACAATTTTGAAAA
ATTGTTTGGGAAAAAAGCCAGTAAAAAACGAAAGCTATACAATGGACGAATTCGAGTAGATTATTATCAGTACTTTGGAC
CTAAACCACCAAATCTTTAA

Upstream 100 bases:

>100_bases
ATTTTAATGAACAAGGTGAACCCAACCCAACTGATTTTCCCATTGAATTGTATTTGAAATATTTATCTAAAAATAACAAG
AACTAGGATGGAGGATGCTA

Downstream 100 bases:

>100_bases
AACCATTAAAACCTCAGGTATTTTGAACTTAAGATCGCGATACTTCTGCTAACCTTGATACGTCTCCCAATAATAGAAAA
TAATAACAATAAAGGTTAAA

Product: putative RNA methylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 379; Mature: 378

Protein sequence:

>379_residues
MSQFELIATSTFGLEALVKQEIKDLGYEIVSVENGKVTFKGDEKAICRANLWLRTADRVKLKIGEFTAKSFEELFEQTYQ
LPWEELLPQNAEFPVEGKSVKSQLYSVPNCQSIVKKAVVKKMGQAYGQSWFEEDGPFYKIEVALLKDIATLTIDTSGPGL
HKRGYRALVSHAPLKETLAAALIMLARWYPDTALIDPLCGSGTIPIEAAMIGRNIPPGLNRNFSASSWPIISDKIWQNVR
EEGQDKAEFDKELKIYGSDFDEEMVQLSQDNAEKVLGKNIPEFTCMPIDKISSNEEYGKLICNPPYGERLGEEPEVDDLY
RQMGQIFNKRFPTWSYYILTPHNNFEKLFGKKASKKRKLYNGRIRVDYYQYFGPKPPNL

Sequences:

>Translated_379_residues
MSQFELIATSTFGLEALVKQEIKDLGYEIVSVENGKVTFKGDEKAICRANLWLRTADRVKLKIGEFTAKSFEELFEQTYQ
LPWEELLPQNAEFPVEGKSVKSQLYSVPNCQSIVKKAVVKKMGQAYGQSWFEEDGPFYKIEVALLKDIATLTIDTSGPGL
HKRGYRALVSHAPLKETLAAALIMLARWYPDTALIDPLCGSGTIPIEAAMIGRNIPPGLNRNFSASSWPIISDKIWQNVR
EEGQDKAEFDKELKIYGSDFDEEMVQLSQDNAEKVLGKNIPEFTCMPIDKISSNEEYGKLICNPPYGERLGEEPEVDDLY
RQMGQIFNKRFPTWSYYILTPHNNFEKLFGKKASKKRKLYNGRIRVDYYQYFGPKPPNL
>Mature_378_residues
SQFELIATSTFGLEALVKQEIKDLGYEIVSVENGKVTFKGDEKAICRANLWLRTADRVKLKIGEFTAKSFEELFEQTYQL
PWEELLPQNAEFPVEGKSVKSQLYSVPNCQSIVKKAVVKKMGQAYGQSWFEEDGPFYKIEVALLKDIATLTIDTSGPGLH
KRGYRALVSHAPLKETLAAALIMLARWYPDTALIDPLCGSGTIPIEAAMIGRNIPPGLNRNFSASSWPIISDKIWQNVRE
EGQDKAEFDKELKIYGSDFDEEMVQLSQDNAEKVLGKNIPEFTCMPIDKISSNEEYGKLICNPPYGERLGEEPEVDDLYR
QMGQIFNKRFPTWSYYILTPHNNFEKLFGKKASKKRKLYNGRIRVDYYQYFGPKPPNL

Specific function: Unknown

COG id: COG0116

COG function: function code L; Predicted N6-adenine-specific DNA methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 THUMP domain [H]

Homologues:

Organism=Escherichia coli, GI1787181, Length=365, Percent_Identity=33.1506849315069, Blast_Score=189, Evalue=2e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002052
- InterPro:   IPR000241
- InterPro:   IPR004114 [H]

Pfam domain/function: PF02926 THUMP; PF01170 UPF0020 [H]

EC number: NA

Molecular weight: Translated: 43172; Mature: 43041

Theoretical pI: Translated: 5.94; Mature: 5.94

Prosite motif: PS51165 THUMP ; PS00092 N6_MTASE ; PS01261 UPF0020

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQFELIATSTFGLEALVKQEIKDLGYEIVSVENGKVTFKGDEKAICRANLWLRTADRVK
CCCCEEEEECHHHHHHHHHHHHHHCCEEEEEEECCEEEEECCCCEEEEHHHEEEECCCEE
LKIGEFTAKSFEELFEQTYQLPWEELLPQNAEFPVEGKSVKSQLYSVPNCQSIVKKAVVK
EEEHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHH
KMGQAYGQSWFEEDGPFYKIEVALLKDIATLTIDTSGPGLHKRGYRALVSHAPLKETLAA
HHHHHHHHHHHHCCCCEEEEEHHHHHCCCEEEEECCCCCCHHHHHHHHHHCCCHHHHHHH
ALIMLARWYPDTALIDPLCGSGTIPIEAAMIGRNIPPGLNRNFSASSWPIISDKIWQNVR
HHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
EEGQDKAEFDKELKIYGSDFDEEMVQLSQDNAEKVLGKNIPEFTCMPIDKISSNEEYGKL
HCCCCHHHHCCCEEEECCCHHHHHHHHHCCCHHHHHHCCCCCCCCCCHHHCCCCCCCCCE
ICNPPYGERLGEEPEVDDLYRQMGQIFNKRFPTWSYYILTPHNNFEKLFGKKASKKRKLY
EECCCCHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHCCHHHHHHHHH
NGRIRVDYYQYFGPKPPNL
CCEEEEEEEECCCCCCCCC
>Mature Secondary Structure 
SQFELIATSTFGLEALVKQEIKDLGYEIVSVENGKVTFKGDEKAICRANLWLRTADRVK
CCCEEEEECHHHHHHHHHHHHHHCCEEEEEEECCEEEEECCCCEEEEHHHEEEECCCEE
LKIGEFTAKSFEELFEQTYQLPWEELLPQNAEFPVEGKSVKSQLYSVPNCQSIVKKAVVK
EEEHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHH
KMGQAYGQSWFEEDGPFYKIEVALLKDIATLTIDTSGPGLHKRGYRALVSHAPLKETLAA
HHHHHHHHHHHHCCCCEEEEEHHHHHCCCEEEEECCCCCCHHHHHHHHHHCCCHHHHHHH
ALIMLARWYPDTALIDPLCGSGTIPIEAAMIGRNIPPGLNRNFSASSWPIISDKIWQNVR
HHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
EEGQDKAEFDKELKIYGSDFDEEMVQLSQDNAEKVLGKNIPEFTCMPIDKISSNEEYGKL
HCCCCHHHHCCCEEEECCCHHHHHHHHHCCCHHHHHHCCCCCCCCCCHHHCCCCCCCCCE
ICNPPYGERLGEEPEVDDLYRQMGQIFNKRFPTWSYYILTPHNNFEKLFGKKASKKRKLY
EECCCCHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHCCHHHHHHHHH
NGRIRVDYYQYFGPKPPNL
CCEEEEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8760912; 9384377; 2423526 [H]