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The map label for this gene is secY [H]

Identifier: 188584856

GI number: 188584856

Start: 228967

End: 230226

Strand: Direct

Name: secY [H]

Synonym: Nther_0214

Alternate gene names: 188584856

Gene position: 228967-230226 (Clockwise)

Preceding gene: 188584855

Following gene: 188584857

Centisome position: 7.23

GC content: 39.13

Gene sequence:

>1260_bases
GTGCTTGGTACTCTCGTTAATGCATGGCGCATTAAGGACCTGAGACAAAAGTTGATTTTCACCTTGGCTATGTTGTTTGT
TTTTAGATTAGGTGCTCACGTACCGGTTCCTGGAATAGATGCTACACAAATTCAACAGCTGTTTGAAGGGCAAGATTTAT
TCGGGTTTTTAAATGTAATAGCTGGTGGAGCCTTGAGCCAGTTGTCAATATTTGCCATGAGTATTACCCCATACATCAAT
GCTTCAATTATCATGCAACTGTTAACTGTAGTTGTTCCAAAATTTGAGCAATGGTCCAAAGAAGGTCAAGAAGGAAAGAA
AAAGTTAGCCCAGTATACTCGTTACGGGACAGTAATAATTGCTTTTCTGCAGGCCATAGGTATGACTTTAGGTCTATTAA
GGCCTGCAGTAGTAGACCCGAGCTTTACATCTTATATGGTAATAATTCTGTCTCTTACGGCAGGAACTGCTTTTCTTATG
TGGCTTGGTGAACAGATTAATGATAGAGGTATTGGAAATGGAATTTCCATCATTATATTTGCTGGAATAGTATCCCGGAT
ACCTCAGGTTATTACTACAATGTACGAAATGGTAAGAGTGGGAGAAATTAATATTTTACTGGTGCTAGTATTACTAGCTA
TACTCTTGAGTGTAATTGTAGGAGTTGTAGCCTTACAGGAAGGTCGTAGACAGATTCCAGTACAATATGCTAAAAGAGTT
GTAGGTCGAAAGATGTACGGTGGTCAGTCAACTCACATTCCATTAAAAGTAAATCAAGCAGGGGTAATCCCGGTAATCTT
TGCATCATCAATTCTGATGTTTCCGGAAACTATAGCGCAATTCATACAACACCCCATTGCTGTTAGTATAGCAAATGCGA
TAGGATTTGGAACACCACTGAATACAGTTCTGTATGTTGTTTTAATAGTTTTCTTCACCTACTTCTATACAGCAATCCAG
TTTAACCCTCAAGATATGGCAGACAATATGAAAAAATACGGTGGTTTTATACCCGGTATCAGACCTGGTAAACCCACAGC
CAAATATTTAAGTAAAATCATGGATAGAATTACTCTTGCCGGAGCTTTTGCCCTGGCGGGTATTGTTATCTTACCAATAT
TACTCGATGGTGTAGTAGAGATGAACATTATGTTTGGTGGAACGGCATTGATCATTATGGTAGGTGTGGCTTTGGAGACA
ATGAAGCAAATCGAGAGCCAGATGTTGATGAGACACTATCAAGGCTTTATGAAGAAGTGA

Upstream 100 bases:

>100_bases
GGTGAGATTGACAAAAAAATAACAGTAAAGGCCCATAAATTTTCTAAACAAGCAAAAGAAAAAATTGAGGAAGCCGGTGG
AAAGGTAGAGGTGATTTAGG

Downstream 100 bases:

>100_bases
TATTTTAGGGGGGTAAGAAATGCGCATAATTTTAATGGGACCTCCAGGAGCAGGAAAAGGAACACAAGCTGAAAAACTAT
CAAAAGAATTGGATGTACCA

Product: protein translocase subunit secY/sec61 alpha

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 419; Mature: 419

Protein sequence:

>419_residues
MLGTLVNAWRIKDLRQKLIFTLAMLFVFRLGAHVPVPGIDATQIQQLFEGQDLFGFLNVIAGGALSQLSIFAMSITPYIN
ASIIMQLLTVVVPKFEQWSKEGQEGKKKLAQYTRYGTVIIAFLQAIGMTLGLLRPAVVDPSFTSYMVIILSLTAGTAFLM
WLGEQINDRGIGNGISIIIFAGIVSRIPQVITTMYEMVRVGEINILLVLVLLAILLSVIVGVVALQEGRRQIPVQYAKRV
VGRKMYGGQSTHIPLKVNQAGVIPVIFASSILMFPETIAQFIQHPIAVSIANAIGFGTPLNTVLYVVLIVFFTYFYTAIQ
FNPQDMADNMKKYGGFIPGIRPGKPTAKYLSKIMDRITLAGAFALAGIVILPILLDGVVEMNIMFGGTALIIMVGVALET
MKQIESQMLMRHYQGFMKK

Sequences:

>Translated_419_residues
MLGTLVNAWRIKDLRQKLIFTLAMLFVFRLGAHVPVPGIDATQIQQLFEGQDLFGFLNVIAGGALSQLSIFAMSITPYIN
ASIIMQLLTVVVPKFEQWSKEGQEGKKKLAQYTRYGTVIIAFLQAIGMTLGLLRPAVVDPSFTSYMVIILSLTAGTAFLM
WLGEQINDRGIGNGISIIIFAGIVSRIPQVITTMYEMVRVGEINILLVLVLLAILLSVIVGVVALQEGRRQIPVQYAKRV
VGRKMYGGQSTHIPLKVNQAGVIPVIFASSILMFPETIAQFIQHPIAVSIANAIGFGTPLNTVLYVVLIVFFTYFYTAIQ
FNPQDMADNMKKYGGFIPGIRPGKPTAKYLSKIMDRITLAGAFALAGIVILPILLDGVVEMNIMFGGTALIIMVGVALET
MKQIESQMLMRHYQGFMKK
>Mature_419_residues
MLGTLVNAWRIKDLRQKLIFTLAMLFVFRLGAHVPVPGIDATQIQQLFEGQDLFGFLNVIAGGALSQLSIFAMSITPYIN
ASIIMQLLTVVVPKFEQWSKEGQEGKKKLAQYTRYGTVIIAFLQAIGMTLGLLRPAVVDPSFTSYMVIILSLTAGTAFLM
WLGEQINDRGIGNGISIIIFAGIVSRIPQVITTMYEMVRVGEINILLVLVLLAILLSVIVGVVALQEGRRQIPVQYAKRV
VGRKMYGGQSTHIPLKVNQAGVIPVIFASSILMFPETIAQFIQHPIAVSIANAIGFGTPLNTVLYVVLIVFFTYFYTAIQ
FNPQDMADNMKKYGGFIPGIRPGKPTAKYLSKIMDRITLAGAFALAGIVILPILLDGVVEMNIMFGGTALIIMVGVALET
MKQIESQMLMRHYQGFMKK

Specific function: Involved in protein export. Interacts with secA and secE to allow the translocation of proteins across the plasma membrane, by forming part of a channel [H]

COG id: COG0201

COG function: function code U; Preprotein translocase subunit SecY

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secY/SEC61-alpha family [H]

Homologues:

Organism=Escherichia coli, GI1789696, Length=418, Percent_Identity=46.6507177033493, Blast_Score=350, Evalue=1e-97,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002208
- InterPro:   IPR023201 [H]

Pfam domain/function: PF00344 SecY [H]

EC number: NA

Molecular weight: Translated: 46040; Mature: 46040

Theoretical pI: Translated: 10.21; Mature: 10.21

Prosite motif: PS00755 SECY_1 ; PS00756 SECY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLGTLVNAWRIKDLRQKLIFTLAMLFVFRLGAHVPVPGIDATQIQQLFEGQDLFGFLNVI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHH
AGGALSQLSIFAMSITPYINASIIMQLLTVVVPKFEQWSKEGQEGKKKLAQYTRYGTVII
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
AFLQAIGMTLGLLRPAVVDPSFTSYMVIILSLTAGTAFLMWLGEQINDRGIGNGISIIIF
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
AGIVSRIPQVITTMYEMVRVGEINILLVLVLLAILLSVIVGVVALQEGRRQIPVQYAKRV
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
VGRKMYGGQSTHIPLKVNQAGVIPVIFASSILMFPETIAQFIQHPIAVSIANAIGFGTPL
HHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHH
NTVLYVVLIVFFTYFYTAIQFNPQDMADNMKKYGGFIPGIRPGKPTAKYLSKIMDRITLA
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH
GAFALAGIVILPILLDGVVEMNIMFGGTALIIMVGVALETMKQIESQMLMRHYQGFMKK
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLGTLVNAWRIKDLRQKLIFTLAMLFVFRLGAHVPVPGIDATQIQQLFEGQDLFGFLNVI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHH
AGGALSQLSIFAMSITPYINASIIMQLLTVVVPKFEQWSKEGQEGKKKLAQYTRYGTVII
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
AFLQAIGMTLGLLRPAVVDPSFTSYMVIILSLTAGTAFLMWLGEQINDRGIGNGISIIIF
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
AGIVSRIPQVITTMYEMVRVGEINILLVLVLLAILLSVIVGVVALQEGRRQIPVQYAKRV
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
VGRKMYGGQSTHIPLKVNQAGVIPVIFASSILMFPETIAQFIQHPIAVSIANAIGFGTPL
HHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHH
NTVLYVVLIVFFTYFYTAIQFNPQDMADNMKKYGGFIPGIRPGKPTAKYLSKIMDRITLA
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH
GAFALAGIVILPILLDGVVEMNIMFGGTALIIMVGVALETMKQIESQMLMRHYQGFMKK
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1512566; 10192928; 11058132 [H]