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The map label for this gene is mrnC [H]

Identifier: 188584814

GI number: 188584814

Start: 196737

End: 197162

Strand: Direct

Name: mrnC [H]

Synonym: Nther_0172

Alternate gene names: 188584814

Gene position: 196737-197162 (Clockwise)

Preceding gene: 188584813

Following gene: 188584815

Centisome position: 6.21

GC content: 37.32

Gene sequence:

>426_bases
TTGAAAGCATTTGAAAAAACTATAGAACAAAAGACAAAAACGGGTCAATTTTCACCTCAAAGCTTAGCTTATTTAGGGGA
TGCTGTTTATGAGTTATATGTCAGGCTACAAAGTACTGCAACTCCGTATAATTCAGTGAGCAATCTACATGAAAATACTG
TTAGACTAGTTTCTGCTCCCACCCAAGCTGTTTTGTTGGATAAAATCTATCCCAAACTAACCAAAGAAGAACAGGCAATA
GTAAGAAGAGGCAAAAACGCCAAGGTTCATCAACCTCCTAAGGGTGTGAGGTATTACGAGTACCGTCTGGCAACGGGCTT
TGAAGCTCTTGTTGGATATCTTTACCTAAAAGAAAGAGAAGATAGAATAGAAGAGCTGCTAATAAATGAAGTTAACAGGG
AACTGTCAAATGAAGAATGTAAATAA

Upstream 100 bases:

>100_bases
AACAAAAAGATTTTCAACGAGCAGACGCAATTAGAGATGAACTTCGTGACCGAGGAATTATTTTAGAGGATACTCCTGAA
GGAGTGAGGTGGAAACGAAC

Downstream 100 bases:

>100_bases
AAACACCAAATATCTTTTAAAGGGGAGGAGTTGATATAATGAAAGTTATTGATCCACAAGTTCTAATACCAGAGAAAGAA
ATGGATGAAGCCAAATTGAA

Product: ribonuclease III

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 141; Mature: 141

Protein sequence:

>141_residues
MKAFEKTIEQKTKTGQFSPQSLAYLGDAVYELYVRLQSTATPYNSVSNLHENTVRLVSAPTQAVLLDKIYPKLTKEEQAI
VRRGKNAKVHQPPKGVRYYEYRLATGFEALVGYLYLKEREDRIEELLINEVNRELSNEECK

Sequences:

>Translated_141_residues
MKAFEKTIEQKTKTGQFSPQSLAYLGDAVYELYVRLQSTATPYNSVSNLHENTVRLVSAPTQAVLLDKIYPKLTKEEQAI
VRRGKNAKVHQPPKGVRYYEYRLATGFEALVGYLYLKEREDRIEELLINEVNRELSNEECK
>Mature_141_residues
MKAFEKTIEQKTKTGQFSPQSLAYLGDAVYELYVRLQSTATPYNSVSNLHENTVRLVSAPTQAVLLDKIYPKLTKEEQAI
VRRGKNAKVHQPPKGVRYYEYRLATGFEALVGYLYLKEREDRIEELLINEVNRELSNEECK

Specific function: Might be an RNase involved in RNA processing [H]

COG id: COG1939

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RNase III domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000999
- InterPro:   IPR008226 [H]

Pfam domain/function: PF00636 Ribonuclease_3 [H]

EC number: NA

Molecular weight: Translated: 16273; Mature: 16273

Theoretical pI: Translated: 8.86; Mature: 8.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAFEKTIEQKTKTGQFSPQSLAYLGDAVYELYVRLQSTATPYNSVSNLHENTVRLVSAP
CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
TQAVLLDKIYPKLTKEEQAIVRRGKNAKVHQPPKGVRYYEYRLATGFEALVGYLYLKERE
HHHHHHHHHHHHHCHHHHHHHHCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHH
DRIEELLINEVNRELSNEECK
HHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MKAFEKTIEQKTKTGQFSPQSLAYLGDAVYELYVRLQSTATPYNSVSNLHENTVRLVSAP
CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
TQAVLLDKIYPKLTKEEQAIVRRGKNAKVHQPPKGVRYYEYRLATGFEALVGYLYLKERE
HHHHHHHHHHHHHCHHHHHHHHCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHH
DRIEELLINEVNRELSNEECK
HHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]