Click here to switch to the map view.

The map label for this gene is 188584668

Identifier: 188584668

GI number: 188584668

Start: 37023

End: 38330

Strand: Reverse

Name: 188584668

Synonym: Nther_0026

Alternate gene names: NA

Gene position: 38330-37023 (Counterclockwise)

Preceding gene: 188584670

Following gene: NA

Centisome position: 1.21

GC content: 31.5

Gene sequence:

>1308_bases
GTGGGAGTTGTGGGAAATAATATAGGCCAAAAAATTAAAAGAGCTCGTTATGAAAAGGATATGACTCAAGAGGAATTAGC
CGGTAAAGATTTTAACCGCAGCTTTTTAAGTCAAATTGAAAAAGGACTTGTTAAGCCATCTGATCGGGTTCTGTCCATCA
TAGCTGACCGTTTAAATTTACCACTAAGCTACTTTTATGAACCTGAAGACCCTGATAAGGATGATGAGCAAGCTATAAAC
GCTTTAAATAAAGCTAGAAATCTTATTCAATCTAATAAAATGGATGAGGCCTTAGAACTTATCACGAAATCTTTGAAACT
ACAAGATATATCACCTAAATATGCCGGTCTATTAATGAAGGAACAAGGTGAGATTTATTTCCAGGGAAATAACATTCAAA
AATCTCTTTCTTCTCTAAAAAAAGCCAAAATCATTTTCGGAGATCATAAATACCACCATGAATTATGTTCTACCTTAAAT
CACATAGGCGAAATTTATAACCAATCTGAATCATATAAAGAAGCAACTCAACACTTACAACAGGCTATCAATATATTAGA
AGACCATTTCGTCATGGATAATATATTATATCTAGATGTTTACTTTAATCTAGCCTTGTCTTATTTAGGAGAGCAAAAGT
ACCATGAGGCAATTAACACTCTCACTCAGGCAATTCCCTATTCATCTAAAACAAACAATTTTTATAATTTTGGAGAACTG
CACTATTTATTAGGTAGATGTTACCAAAAGACCGGAAAATTTGCTAAAGCTAGAGTTGCCTTTGAAACAGCTATAGAACA
ATTTGTAATGTTTAATAAAAATAAATATACAGGAAAGACTCAGCTGGCTTTAGGTGAACTTGAAGAAACTGAAGGGAATT
TAACTTCAGCTGAAAGATATTATTTAAAAGCTTTAGAACAATTCACATTATTAGAATCTAATGATCAAAGGGAAAGGTTA
AAGCTAAAATTATTGAATATTTATTTACAACTAGATAAAAAAGAGAAAATTAAAGGCCTAGCTCCCTTTGATCTGGAGTT
AGTTGATAGCCTATCTGAAAAAATTGATCTATCTTATGAGCTGTCCAAAATTCATTTGGAAAAAGAAGATTTTGACAACT
GCTTTATAGTATTACAATTTTTAAACGATCTAGTGGATAGAGCAAGACGTAGAAAAATATTTTCCGACAAGAAATTATTA
TTTTACTACAGCTGGATGTCCCATCTCTATTTAAATATGGAATACTACGAACGAGGAAGAAAGTGTTTGAAACAATGTAA
TTCAATTATTAAAAAACTAGGGGAATAA

Upstream 100 bases:

>100_bases
TTTTCACCCTATAAGGACTATTTTTTAAAAAAATATTTCTTAATTTCTTGGTTTTGTGGTAAGCTATAAGTATAGGAGAA
ATTTTAAGGAGGTTGGAAAA

Downstream 100 bases:

>100_bases
AAAATAAAATTAACTACAATGTATAAAAAGGATCCTGCCTAGTCAAGCAGGACCCTTTTAGTTATAGCCTTAATTTATTT
CTTTTTCTCTTTCTCTACTT

Product: transcriptional regulator, XRE family

Products: NA

Alternate protein names: XRE Family Transcriptional Regulator; Helix-Turn-Helix/TPR Domain Protein; Transcriptional Regulator XRE Family

Number of amino acids: Translated: 435; Mature: 434

Protein sequence:

>435_residues
MGVVGNNIGQKIKRARYEKDMTQEELAGKDFNRSFLSQIEKGLVKPSDRVLSIIADRLNLPLSYFYEPEDPDKDDEQAIN
ALNKARNLIQSNKMDEALELITKSLKLQDISPKYAGLLMKEQGEIYFQGNNIQKSLSSLKKAKIIFGDHKYHHELCSTLN
HIGEIYNQSESYKEATQHLQQAINILEDHFVMDNILYLDVYFNLALSYLGEQKYHEAINTLTQAIPYSSKTNNFYNFGEL
HYLLGRCYQKTGKFAKARVAFETAIEQFVMFNKNKYTGKTQLALGELEETEGNLTSAERYYLKALEQFTLLESNDQRERL
KLKLLNIYLQLDKKEKIKGLAPFDLELVDSLSEKIDLSYELSKIHLEKEDFDNCFIVLQFLNDLVDRARRRKIFSDKKLL
FYYSWMSHLYLNMEYYERGRKCLKQCNSIIKKLGE

Sequences:

>Translated_435_residues
MGVVGNNIGQKIKRARYEKDMTQEELAGKDFNRSFLSQIEKGLVKPSDRVLSIIADRLNLPLSYFYEPEDPDKDDEQAIN
ALNKARNLIQSNKMDEALELITKSLKLQDISPKYAGLLMKEQGEIYFQGNNIQKSLSSLKKAKIIFGDHKYHHELCSTLN
HIGEIYNQSESYKEATQHLQQAINILEDHFVMDNILYLDVYFNLALSYLGEQKYHEAINTLTQAIPYSSKTNNFYNFGEL
HYLLGRCYQKTGKFAKARVAFETAIEQFVMFNKNKYTGKTQLALGELEETEGNLTSAERYYLKALEQFTLLESNDQRERL
KLKLLNIYLQLDKKEKIKGLAPFDLELVDSLSEKIDLSYELSKIHLEKEDFDNCFIVLQFLNDLVDRARRRKIFSDKKLL
FYYSWMSHLYLNMEYYERGRKCLKQCNSIIKKLGE
>Mature_434_residues
GVVGNNIGQKIKRARYEKDMTQEELAGKDFNRSFLSQIEKGLVKPSDRVLSIIADRLNLPLSYFYEPEDPDKDDEQAINA
LNKARNLIQSNKMDEALELITKSLKLQDISPKYAGLLMKEQGEIYFQGNNIQKSLSSLKKAKIIFGDHKYHHELCSTLNH
IGEIYNQSESYKEATQHLQQAINILEDHFVMDNILYLDVYFNLALSYLGEQKYHEAINTLTQAIPYSSKTNNFYNFGELH
YLLGRCYQKTGKFAKARVAFETAIEQFVMFNKNKYTGKTQLALGELEETEGNLTSAERYYLKALEQFTLLESNDQRERLK
LKLLNIYLQLDKKEKIKGLAPFDLELVDSLSEKIDLSYELSKIHLEKEDFDNCFIVLQFLNDLVDRARRRKIFSDKKLLF
YYSWMSHLYLNMEYYERGRKCLKQCNSIIKKLGE

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 50817; Mature: 50686

Theoretical pI: Translated: 7.30; Mature: 7.30

Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION ; PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGVVGNNIGQKIKRARYEKDMTQEELAGKDFNRSFLSQIEKGLVKPSDRVLSIIADRLNL
CCCCCCHHHHHHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHCC
PLSYFYEPEDPDKDDEQAINALNKARNLIQSNKMDEALELITKSLKLQDISPKYAGLLMK
CHHEEECCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHEE
EQGEIYFQGNNIQKSLSSLKKAKIIFGDHKYHHELCSTLNHIGEIYNQSESYKEATQHLQ
ECCCEEEECCCHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
QAINILEDHFVMDNILYLDVYFNLALSYLGEQKYHEAINTLTQAIPYSSKTNNFYNFGEL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH
HYLLGRCYQKTGKFAKARVAFETAIEQFVMFNKNKYTGKTQLALGELEETEGNLTSAERY
HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCHHHHHH
YLKALEQFTLLESNDQRERLKLKLLNIYLQLDKKEKIKGLAPFDLELVDSLSEKIDLSYE
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHCCCEE
LSKIHLEKEDFDNCFIVLQFLNDLVDRARRRKIFSDKKLLFYYSWMSHLYLNMEYYERGR
HHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
KCLKQCNSIIKKLGE
HHHHHHHHHHHHHCC
>Mature Secondary Structure 
GVVGNNIGQKIKRARYEKDMTQEELAGKDFNRSFLSQIEKGLVKPSDRVLSIIADRLNL
CCCCCHHHHHHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHCC
PLSYFYEPEDPDKDDEQAINALNKARNLIQSNKMDEALELITKSLKLQDISPKYAGLLMK
CHHEEECCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHEE
EQGEIYFQGNNIQKSLSSLKKAKIIFGDHKYHHELCSTLNHIGEIYNQSESYKEATQHLQ
ECCCEEEECCCHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
QAINILEDHFVMDNILYLDVYFNLALSYLGEQKYHEAINTLTQAIPYSSKTNNFYNFGEL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH
HYLLGRCYQKTGKFAKARVAFETAIEQFVMFNKNKYTGKTQLALGELEETEGNLTSAERY
HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCHHHHHH
YLKALEQFTLLESNDQRERLKLKLLNIYLQLDKKEKIKGLAPFDLELVDSLSEKIDLSYE
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHCCCEE
LSKIHLEKEDFDNCFIVLQFLNDLVDRARRRKIFSDKKLLFYYSWMSHLYLNMEYYERGR
HHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
KCLKQCNSIIKKLGE
HHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA