| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is 188528353
Identifier: 188528353
GI number: 188528353
Start: 1585728
End: 1586729
Strand: Reverse
Name: 188528353
Synonym: HPSH_08135
Alternate gene names: NA
Gene position: 1586729-1585728 (Counterclockwise)
Preceding gene: 188528354
Following gene: 188528351
Centisome position: 98.64
GC content: 39.22
Gene sequence:
>1002_bases ATGCTGATCGCTCGCTTTAAAAAAGCTTTAATCTCTTATTCTTTAGGCGCGCTTATTGTTTCATCTTTATTGGGCGTGGC TAACGCTTCAGTGCAAGAAGTCAAAGTCAAGGATTATTTCGGGGAGCAAACCATAAAGCTTCCTGTTTCTAAAATAATTT ACTTGGGTAGCTTTGCAGAAGTGCCTGCTATGTTCAATACTTGGGATAGGGTTGTAGGCATTTCGGATTACGCTTTTAAA TCTGGTATTGTTAAAGCCACTCTCAAAGATCCTAAACGCATTAAATCCATGAGCAGCGATCATGTGGCGGCTTTGAATGT GGAATTATTAAAAAAACTCAGCCCTGATCTTGTTGTAACCTTTGTGGGCAACCCTAAAGCAGTAGAGCATGCGAAAAAAT TTGGGATTTCATTCCTTTCTTTCCAAGAAAAAACCATTGCAGAAGTCATGCAAGCTATGCAAGCTCAAGCTGCGGTCTTA GAAATTGACGCTTCTAAAAAATTCGCCAAAATGCAAGAAACTTTGGATTTTATCAAAGAGCGTTTGAAAGATGTCAAAAA GAAAAAAGGGGTGGAGCTTTTCCACAAAGCCAATAAAATCAGCGGCCATCAAGCCATTAGCTCAGACATTTTAGAAAAAG GGGGCATAGACAATTTCGGCTTGAAATATGTCAAATTTGGGCGCGCTGATGTTAGCGTGGAAAAAATCGTTAAAGAAAAC CCTGAGATTATCTTTATTTGGTGGATAAGCCCGCTTAGCCCTGAAGATGTGTTAAACAACCCCAAATTTGCTACCATCAA AGCCATTAAAAACAAGCAAGTTTATAAACTCCCCACAATGGATATTGGCGGGCCTAGAGCTCCGCTTATAAGCTTATTTA TCGCTTTAAAAGCCCACCCTGAAGCGTTTAAGGGCGTGGATATTAATGCGATTGTTAAAGACTACTATAAAGTGGTTTTT GATTTGAAAGATGCAGAAATTGAACCCTTTTTATGGCATTAA
Upstream 100 bases:
>100_bases TTTATCTTTTAAGATTTTGTGAAAAATAGTTTCATTTTTACTGCTTGTATTTCCTTAATGGTGTTATAATCGCTTCATAA ATCATACAAAAGGAATTGTC
Downstream 100 bases:
>100_bases TCTTTAAAAAGGGCTAGTATTTTTTAGCCCTTCGTGTATCGCGCTAGGCTTAAAACAAGCCCTATAGCGATACAATTCGC TAAAAGCGAACTCCCTCCAT
Product: hypothetical protein
Products: NA
Alternate protein names: Iron(III)-Siderophore ABC Transporter Periplasmic Subunit
Number of amino acids: Translated: 333; Mature: 333
Protein sequence:
>333_residues MLIARFKKALISYSLGALIVSSLLGVANASVQEVKVKDYFGEQTIKLPVSKIIYLGSFAEVPAMFNTWDRVVGISDYAFK SGIVKATLKDPKRIKSMSSDHVAALNVELLKKLSPDLVVTFVGNPKAVEHAKKFGISFLSFQEKTIAEVMQAMQAQAAVL EIDASKKFAKMQETLDFIKERLKDVKKKKGVELFHKANKISGHQAISSDILEKGGIDNFGLKYVKFGRADVSVEKIVKEN PEIIFIWWISPLSPEDVLNNPKFATIKAIKNKQVYKLPTMDIGGPRAPLISLFIALKAHPEAFKGVDINAIVKDYYKVVF DLKDAEIEPFLWH
Sequences:
>Translated_333_residues MLIARFKKALISYSLGALIVSSLLGVANASVQEVKVKDYFGEQTIKLPVSKIIYLGSFAEVPAMFNTWDRVVGISDYAFK SGIVKATLKDPKRIKSMSSDHVAALNVELLKKLSPDLVVTFVGNPKAVEHAKKFGISFLSFQEKTIAEVMQAMQAQAAVL EIDASKKFAKMQETLDFIKERLKDVKKKKGVELFHKANKISGHQAISSDILEKGGIDNFGLKYVKFGRADVSVEKIVKEN PEIIFIWWISPLSPEDVLNNPKFATIKAIKNKQVYKLPTMDIGGPRAPLISLFIALKAHPEAFKGVDINAIVKDYYKVVF DLKDAEIEPFLWH >Mature_333_residues MLIARFKKALISYSLGALIVSSLLGVANASVQEVKVKDYFGEQTIKLPVSKIIYLGSFAEVPAMFNTWDRVVGISDYAFK SGIVKATLKDPKRIKSMSSDHVAALNVELLKKLSPDLVVTFVGNPKAVEHAKKFGISFLSFQEKTIAEVMQAMQAQAAVL EIDASKKFAKMQETLDFIKERLKDVKKKKGVELFHKANKISGHQAISSDILEKGGIDNFGLKYVKFGRADVSVEKIVKEN PEIIFIWWISPLSPEDVLNNPKFATIKAIKNKQVYKLPTMDIGGPRAPLISLFIALKAHPEAFKGVDINAIVKDYYKVVF DLKDAEIEPFLWH
Specific function: Unknown
COG id: COG0614
COG function: function code P; ABC-type Fe3+-hydroxamate transport system, periplasmic component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37130; Mature: 37130
Theoretical pI: Translated: 10.09; Mature: 10.09
Prosite motif: PS50983 FE_B12_PBP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLIARFKKALISYSLGALIVSSLLGVANASVQEVKVKDYFGEQTIKLPVSKIIYLGSFAE CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEHHHHHCCCEEECCHHHHHHHCCHHH VPAMFNTWDRVVGISDYAFKSGIVKATLKDPKRIKSMSSDHVAALNVELLKKLSPDLVVT HCHHHHHHHHHHCCCHHHHHCCCEEEECCCHHHHHHCCCCCEEEHHHHHHHHCCCCEEEE FVGNPKAVEHAKKFGISFLSFQEKTIAEVMQAMQAQAAVLEIDASKKFAKMQETLDFIKE ECCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHEEEECCHHHHHHHHHHHHHHHH RLKDVKKKKGVELFHKANKISGHQAISSDILEKGGIDNFGLKYVKFGRADVSVEKIVKEN HHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHCC PEIIFIWWISPLSPEDVLNNPKFATIKAIKNKQVYKLPTMDIGGPRAPLISLFIALKAHP CCEEEEEEECCCCHHHHHCCCCEEEEEECCCCCEEECCCCCCCCCHHHHHHHHHHHHCCC EAFKGVDINAIVKDYYKVVFDLKDAEIEPFLWH HHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure MLIARFKKALISYSLGALIVSSLLGVANASVQEVKVKDYFGEQTIKLPVSKIIYLGSFAE CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEHHHHHCCCEEECCHHHHHHHCCHHH VPAMFNTWDRVVGISDYAFKSGIVKATLKDPKRIKSMSSDHVAALNVELLKKLSPDLVVT HCHHHHHHHHHHCCCHHHHHCCCEEEECCCHHHHHHCCCCCEEEHHHHHHHHCCCCEEEE FVGNPKAVEHAKKFGISFLSFQEKTIAEVMQAMQAQAAVLEIDASKKFAKMQETLDFIKE ECCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHEEEECCHHHHHHHHHHHHHHHH RLKDVKKKKGVELFHKANKISGHQAISSDILEKGGIDNFGLKYVKFGRADVSVEKIVKEN HHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHCC PEIIFIWWISPLSPEDVLNNPKFATIKAIKNKQVYKLPTMDIGGPRAPLISLFIALKAHP CCEEEEEEECCCCHHHHHCCCCEEEEEECCCCCEEECCCCCCCCCHHHHHHHHHHHHCCC EAFKGVDINAIVKDYYKVVFDLKDAEIEPFLWH HHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA