Click here to switch to the map view.

The map label for this gene is flgC

Identifier: 188528350

GI number: 188528350

Start: 1583409

End: 1583894

Strand: Reverse

Name: flgC

Synonym: HPSH_08120

Alternate gene names: 188528350

Gene position: 1583894-1583409 (Counterclockwise)

Preceding gene: 188528351

Following gene: 188528349

Centisome position: 98.47

GC content: 45.47

Gene sequence:

>486_bases
ATGTTTTTATCTTCTTTTGATATTAGCGGTTATGGTTTGTCCGCCCAACGCTTAAGGGCTAATTTGATTTCTTCTAATAT
CGCTAACGCTAACACCACACGCACGAGCGAAGGAGGCCCTTATAGGAGGCAAGAGGCGGTGTTTAAGGCTTTTGATTTCA
ATGAGATTTTAAACCAAAAAATCGCTCAAAACCATCAAATCACCCCCTATGAAGACCCCTTAGATGAAGGCGATGACAAC
CCCTTAATCCCTATCACAAGCGTGGTGGTGGATAAGATTGTGCGCGATGATAGCGAGCCTTTGATGAAATACGATCCCAG
CCACCCTGACGCTAACGCTCAAGGCTATGTAGCTTACCCCAATGTGAATGCGGTGGTTGAAATGGCGGATTTAGTGGAAG
CGACTAGAGCCTATCAGGCCAATGTCGCAGCCTTTCAAAGCGCTAAAAACATGGCGCAAAATGCGATTGGCATGTTACAA
ACATGA

Upstream 100 bases:

>100_bases
CTCCACCATGTATTTAGCCTTGAGTTCGGCCTTAAAAAAGTATCGAGGCGTGATCAATTACGCCATTGATTCCAGTAAGA
ATTTATAGTTAAGGGAAAGC

Downstream 100 bases:

>100_bases
ACGATTTCCAACGATTTATGGTAGTATAAGAAAATTTAGGTAGTATTAGCCAAAGATCAGTAGAATACAGAAATGAATAA
AATATTTAATAGAGTTAAAT

Product: flagellar basal body rod protein FlgC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 161; Mature: 161

Protein sequence:

>161_residues
MFLSSFDISGYGLSAQRLRANLISSNIANANTTRTSEGGPYRRQEAVFKAFDFNEILNQKIAQNHQITPYEDPLDEGDDN
PLIPITSVVVDKIVRDDSEPLMKYDPSHPDANAQGYVAYPNVNAVVEMADLVEATRAYQANVAAFQSAKNMAQNAIGMLQ
T

Sequences:

>Translated_161_residues
MFLSSFDISGYGLSAQRLRANLISSNIANANTTRTSEGGPYRRQEAVFKAFDFNEILNQKIAQNHQITPYEDPLDEGDDN
PLIPITSVVVDKIVRDDSEPLMKYDPSHPDANAQGYVAYPNVNAVVEMADLVEATRAYQANVAAFQSAKNMAQNAIGMLQ
T
>Mature_161_residues
MFLSSFDISGYGLSAQRLRANLISSNIANANTTRTSEGGPYRRQEAVFKAFDFNEILNQKIAQNHQITPYEDPLDEGDDN
PLIPITSVVVDKIVRDDSEPLMKYDPSHPDANAQGYVAYPNVNAVVEMADLVEATRAYQANVAAFQSAKNMAQNAIGMLQ
T

Specific function: Unknown

COG id: COG1558

COG function: function code N; Flagellar basal body rod protein

Gene ontology:

Cell location: Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flagella basal body rod proteins family [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010930
- InterPro:   IPR001444
- InterPro:   IPR019776
- InterPro:   IPR006299 [H]

Pfam domain/function: PF06429 DUF1078; PF00460 Flg_bb_rod [H]

EC number: NA

Molecular weight: Translated: 17715; Mature: 17715

Theoretical pI: Translated: 4.37; Mature: 4.37

Prosite motif: PS00588 FLAGELLA_BB_ROD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFLSSFDISGYGLSAQRLRANLISSNIANANTTRTSEGGPYRRQEAVFKAFDFNEILNQK
CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHH
IAQNHQITPYEDPLDEGDDNPLIPITSVVVDKIVRDDSEPLMKYDPSHPDANAQGYVAYP
HHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECC
NVNAVVEMADLVEATRAYQANVAAFQSAKNMAQNAIGMLQT
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MFLSSFDISGYGLSAQRLRANLISSNIANANTTRTSEGGPYRRQEAVFKAFDFNEILNQK
CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHH
IAQNHQITPYEDPLDEGDDNPLIPITSVVVDKIVRDDSEPLMKYDPSHPDANAQGYVAYP
HHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECC
NVNAVVEMADLVEATRAYQANVAAFQSAKNMAQNAIGMLQT
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9403685 [H]