| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
Click here to switch to the map view.
The map label for this gene is leuS
Identifier: 188528338
GI number: 188528338
Start: 1567946
End: 1570366
Strand: Direct
Name: leuS
Synonym: HPSH_08050
Alternate gene names: 188528338
Gene position: 1567946-1570366 (Clockwise)
Preceding gene: 188528337
Following gene: 188528339
Centisome position: 97.48
GC content: 40.19
Gene sequence:
>2421_bases ATGGATTTTATCAATATAGAAAAAAAATGGCAAGAATTTTGGTGGAAAAATAAGAGTTTTGAACCTAAAGACGATTTTAA CCTCCCTAAAAAATACATTTTGAGCATGCTGCCTTATCCTAGTGGGGAAATCCACATGGGGCATGTGCGCAATTACACCA TTGGCGACGCTTTGGCGCGTTATTATCGTTTGCACCATTATAATGTGTTACACCCTATGGGGTTTGATTCTTTTGGGATG CCTGCAGAAAATGCGGCCATTAAGCATGGTATCCACCCTAAAACCTGGACTTATGAAAACATTGAAAACATGCAAAAAGA GTTTGAAACTTTAGGGTTTTCTTTTTCTAAAAATAGGGAATTTGCCACTTCAGATCCGGATTACACGAAATTTGAACAGC AATTTTTCATTGACTTGTGGGAAAAAGGGCTAGTCTATCGCAAGAAAGCCATGCTCAATTGGTGCCCTAACGATAAAACC GTTTTAGCTAATGAGCAAGTCATTGATGGGAGGTGTTGGCGTTGCGATACAGAAGTTATTCAAAAAGAACTCTATCAATA TTATTTGAAGATCACAAATTACGCTGAAGAATTGCTCAAAGACTTAAAGGCTTTAGAAAACCATTGGCCTTCTCAAGTCC TAATTATGCAAAAAAACTGGATAGGGAAATCTAGCGGGTTGCAATTTGGTTTTAAAATCGCTGATGAGTGCTTGAAGGCT TGCAATGGCATTCAAGAAATTGAAGTTTTTACCACAAGAGCGGACACCATTTATGGCATAACTTTCATCGCCATCGCCCC AGAACACCCTTTAGTAGAGCATGCCATTAAGCAAGTGAGCCAAGAAGATTCAAAGATGATTAAAGCGATTTTAAACACGA CTCAAAGAGAAAGAGCTTTAGAGAAAAAAGGGGCGTTTTTAGGCATTTACGCTATCCACCCTTTAACAAAGCAAAAAATC CCTGTGTGGGTGGCTAATTTCGCCCTAGCTCATTATGGCTCTGGGGCGTTAATGGGCGTGCCAGCCTGCGATGAAAGGGA TTTTGAATTCGCTAATCTTTATCATATCCCTATTAAAGTGATCACTCAAAGCCCTCAAAATTTGCCCCACACCAAAGAAG AGGTTTTAAAAAATAGCGGGGAGTGGAGTGATCTTTCTAGCTCAGTGGCCAGAGAAAAAATCATTGCTTATTTTGAAAAA GAAAACCTCGGTAAAAGGGTGATCAACTACCGCTTGCAAGATTGGGGAGTGAGCCGTCAAAGGTATTGGGGAGCGCCTAT TCCTATGATTCATTGCAAACATTGCGGGATTGTGCCTGAAACCCAACTGCCGGTAACTTTGCCTGAAGACATTGTGATTG ATGGGGAGGGCAATCCGTTAGAAAAGCATGCGAGTTGGAAATTCGCTCAATGCCCTAAATGCCACAAAAACGCTTTAAGA GAAACAGACACTATGGATACTTTCATCCAATCTAGTTGGTATTTCTTGCGCTACACCACGCCCAAAAATCAGCGCGAAAA TCAAGCGTTTGATCAAAATTACTTGAAGTATTTCATGCCAGTGGACACTTACATTGGCGGCATTGAACATGCGATTTTGC ACTTGTTATATGCGCGCTTTTTCACTAAGGCTTTAAGGGATTTGGGCTATCTTAATTTAGATGAGCCTTTTAAACAGCTT ATCACTCAAGGCATGGTCTTAAAAGATGGCGCTAAGATGAGCAAATCTAAAGGCAATGTCGTTAGCCCTAAAGAGATACT TAAAAAATACGGGGCCGATGCGGCGAGGCTTTTTATCCTTTTTGCTGCCCCACCGGCTAAAGAGTTAGAATGGAATGACA ACGCTTTAGAAGGGGCGCACCGGTTTATCAAGCGCTTATACGACAAAGCGAGCGCTATTAACCCCACTACTTCTAAGCCT GAATTTAAAGAAGTCAGCCTGAATGAAGCGGAAAAATTAGGGCGTAAAAAAGTCTATGAAGCGTTAAAAAAATCGCATGA AATTTTCAATAAGGCTGAAAGCGCTTATTCGTTTAACACTTTGATCGCAAGTTGCATGGAAGCTTTAAACGCTTTGAGCG CGCAAAATAATGAGCGGATTTTATGCGAGGGTTATTTTGTGTTGTTGCAAATTTTAGAGCCTATTATCCCGCACACGGCA TGGGAGTTGAGCGAGAGGCTTTTTAAAAGAGAGAATTTTAAGCCTATAGCGATCGATGAAAGCGCTTTTGTGGAAGACTT TATGACTTTAGGGCTTACCATTAATGGCAAAAGGCGCGCGGAATTGAAAGTTAGTATTAACGCTGATAAAGAAGAAATCA TTATTTTGGCTAAAAAAGAATTAGAGAAATATTTAGAAAATGCGAGCGTTAAAAAAGAAATTTATGTGCCTAATAAGCTT GTTAATTTTGTTATCGCATGA
Upstream 100 bases:
>100_bases ATACATGCTCATGATTGGGGCGTTGATTAGCAACGCTTTCAGCCTTATCTTTTTGTTGGTTGAAAGCGTTGTAACGAGCG AAACGGATTAAGGGGTAGCG
Downstream 100 bases:
>100_bases GGGCTTTACTTTTTTTTATTTTGCTATTTTTGTTCAAGGGCTGTGGGTATAAGCCCATCGCCGCTTACGCTCAAAACGCT TTAGGCGATAGCATATACGT
Product: leucyl-tRNA synthetase
Products: NA
Alternate protein names: Leucine--tRNA ligase; LeuRS [H]
Number of amino acids: Translated: 806; Mature: 806
Protein sequence:
>806_residues MDFINIEKKWQEFWWKNKSFEPKDDFNLPKKYILSMLPYPSGEIHMGHVRNYTIGDALARYYRLHHYNVLHPMGFDSFGM PAENAAIKHGIHPKTWTYENIENMQKEFETLGFSFSKNREFATSDPDYTKFEQQFFIDLWEKGLVYRKKAMLNWCPNDKT VLANEQVIDGRCWRCDTEVIQKELYQYYLKITNYAEELLKDLKALENHWPSQVLIMQKNWIGKSSGLQFGFKIADECLKA CNGIQEIEVFTTRADTIYGITFIAIAPEHPLVEHAIKQVSQEDSKMIKAILNTTQRERALEKKGAFLGIYAIHPLTKQKI PVWVANFALAHYGSGALMGVPACDERDFEFANLYHIPIKVITQSPQNLPHTKEEVLKNSGEWSDLSSSVAREKIIAYFEK ENLGKRVINYRLQDWGVSRQRYWGAPIPMIHCKHCGIVPETQLPVTLPEDIVIDGEGNPLEKHASWKFAQCPKCHKNALR ETDTMDTFIQSSWYFLRYTTPKNQRENQAFDQNYLKYFMPVDTYIGGIEHAILHLLYARFFTKALRDLGYLNLDEPFKQL ITQGMVLKDGAKMSKSKGNVVSPKEILKKYGADAARLFILFAAPPAKELEWNDNALEGAHRFIKRLYDKASAINPTTSKP EFKEVSLNEAEKLGRKKVYEALKKSHEIFNKAESAYSFNTLIASCMEALNALSAQNNERILCEGYFVLLQILEPIIPHTA WELSERLFKRENFKPIAIDESAFVEDFMTLGLTINGKRRAELKVSINADKEEIIILAKKELEKYLENASVKKEIYVPNKL VNFVIA
Sequences:
>Translated_806_residues MDFINIEKKWQEFWWKNKSFEPKDDFNLPKKYILSMLPYPSGEIHMGHVRNYTIGDALARYYRLHHYNVLHPMGFDSFGM PAENAAIKHGIHPKTWTYENIENMQKEFETLGFSFSKNREFATSDPDYTKFEQQFFIDLWEKGLVYRKKAMLNWCPNDKT VLANEQVIDGRCWRCDTEVIQKELYQYYLKITNYAEELLKDLKALENHWPSQVLIMQKNWIGKSSGLQFGFKIADECLKA CNGIQEIEVFTTRADTIYGITFIAIAPEHPLVEHAIKQVSQEDSKMIKAILNTTQRERALEKKGAFLGIYAIHPLTKQKI PVWVANFALAHYGSGALMGVPACDERDFEFANLYHIPIKVITQSPQNLPHTKEEVLKNSGEWSDLSSSVAREKIIAYFEK ENLGKRVINYRLQDWGVSRQRYWGAPIPMIHCKHCGIVPETQLPVTLPEDIVIDGEGNPLEKHASWKFAQCPKCHKNALR ETDTMDTFIQSSWYFLRYTTPKNQRENQAFDQNYLKYFMPVDTYIGGIEHAILHLLYARFFTKALRDLGYLNLDEPFKQL ITQGMVLKDGAKMSKSKGNVVSPKEILKKYGADAARLFILFAAPPAKELEWNDNALEGAHRFIKRLYDKASAINPTTSKP EFKEVSLNEAEKLGRKKVYEALKKSHEIFNKAESAYSFNTLIASCMEALNALSAQNNERILCEGYFVLLQILEPIIPHTA WELSERLFKRENFKPIAIDESAFVEDFMTLGLTINGKRRAELKVSINADKEEIIILAKKELEKYLENASVKKEIYVPNKL VNFVIA >Mature_806_residues MDFINIEKKWQEFWWKNKSFEPKDDFNLPKKYILSMLPYPSGEIHMGHVRNYTIGDALARYYRLHHYNVLHPMGFDSFGM PAENAAIKHGIHPKTWTYENIENMQKEFETLGFSFSKNREFATSDPDYTKFEQQFFIDLWEKGLVYRKKAMLNWCPNDKT VLANEQVIDGRCWRCDTEVIQKELYQYYLKITNYAEELLKDLKALENHWPSQVLIMQKNWIGKSSGLQFGFKIADECLKA CNGIQEIEVFTTRADTIYGITFIAIAPEHPLVEHAIKQVSQEDSKMIKAILNTTQRERALEKKGAFLGIYAIHPLTKQKI PVWVANFALAHYGSGALMGVPACDERDFEFANLYHIPIKVITQSPQNLPHTKEEVLKNSGEWSDLSSSVAREKIIAYFEK ENLGKRVINYRLQDWGVSRQRYWGAPIPMIHCKHCGIVPETQLPVTLPEDIVIDGEGNPLEKHASWKFAQCPKCHKNALR ETDTMDTFIQSSWYFLRYTTPKNQRENQAFDQNYLKYFMPVDTYIGGIEHAILHLLYARFFTKALRDLGYLNLDEPFKQL ITQGMVLKDGAKMSKSKGNVVSPKEILKKYGADAARLFILFAAPPAKELEWNDNALEGAHRFIKRLYDKASAINPTTSKP EFKEVSLNEAEKLGRKKVYEALKKSHEIFNKAESAYSFNTLIASCMEALNALSAQNNERILCEGYFVLLQILEPIIPHTA WELSERLFKRENFKPIAIDESAFVEDFMTLGLTINGKRRAELKVSINADKEEIIILAKKELEKYLENASVKKEIYVPNKL VNFVIA
Specific function: Unknown
COG id: COG0495
COG function: function code J; Leucyl-tRNA synthetase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-I aminoacyl-tRNA synthetase family [H]
Homologues:
Organism=Homo sapiens, GI7661872, Length=878, Percent_Identity=33.4851936218679, Blast_Score=455, Evalue=1e-128, Organism=Escherichia coli, GI1786861, Length=868, Percent_Identity=42.5115207373272, Blast_Score=687, Evalue=0.0, Organism=Escherichia coli, GI1790708, Length=413, Percent_Identity=23.2445520581114, Blast_Score=92, Evalue=9e-20, Organism=Caenorhabditis elegans, GI71997510, Length=730, Percent_Identity=30.958904109589, Blast_Score=298, Evalue=9e-81, Organism=Caenorhabditis elegans, GI71997517, Length=730, Percent_Identity=30.958904109589, Blast_Score=298, Evalue=1e-80, Organism=Caenorhabditis elegans, GI212645227, Length=273, Percent_Identity=30.7692307692308, Blast_Score=115, Evalue=1e-25, Organism=Saccharomyces cerevisiae, GI6323414, Length=804, Percent_Identity=37.8109452736318, Blast_Score=506, Evalue=1e-144, Organism=Saccharomyces cerevisiae, GI6321531, Length=876, Percent_Identity=20.662100456621, Blast_Score=104, Evalue=6e-23, Organism=Drosophila melanogaster, GI21355409, Length=839, Percent_Identity=31.5852205005959, Blast_Score=373, Evalue=1e-103, Organism=Drosophila melanogaster, GI281366294, Length=141, Percent_Identity=29.7872340425532, Blast_Score=69, Evalue=1e-11,
Paralogues:
None
Copy number: 800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001412 - InterPro: IPR002300 - InterPro: IPR002302 - InterPro: IPR014729 - InterPro: IPR009080 - InterPro: IPR009008 [H]
Pfam domain/function: PF00133 tRNA-synt_1 [H]
EC number: =6.1.1.4 [H]
Molecular weight: Translated: 93140; Mature: 93140
Theoretical pI: Translated: 7.90; Mature: 7.90
Prosite motif: PS00178 AA_TRNA_LIGASE_I
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDFINIEKKWQEFWWKNKSFEPKDDFNLPKKYILSMLPYPSGEIHMGHVRNYTIGDALAR CCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEEECCCCCCCHHHHHHH YYRLHHYNVLHPMGFDSFGMPAENAAIKHGIHPKTWTYENIENMQKEFETLGFSFSKNRE HHHHHHCCEECCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCC FATSDPDYTKFEQQFFIDLWEKGLVYRKKAMLNWCPNDKTVLANEQVIDGRCWRCDTEVI CCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCEEEECCCEECCCCCCCCHHHH QKELYQYYLKITNYAEELLKDLKALENHWPSQVLIMQKNWIGKSSGLQFGFKIADECLKA HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHH CNGIQEIEVFTTRADTIYGITFIAIAPEHPLVEHAIKQVSQEDSKMIKAILNTTQRERAL HCCCEEEEEEEECCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EKKGAFLGIYAIHPLTKQKIPVWVANFALAHYGSGALMGVPACDERDFEFANLYHIPIKV HHCCCEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEECCCCCCCCCCCEEEEEEEEEEE ITQSPQNLPHTKEEVLKNSGEWSDLSSSVAREKIIAYFEKENLGKRVINYRLQDWGVSRQ EECCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH RYWGAPIPMIHCKHCGIVPETQLPVTLPEDIVIDGEGNPLEKHASWKFAQCPKCHKNALR HCCCCCCCEEEECCCCCCCCCCCCEECCCCEEECCCCCCCHHHCCCCCCCCCHHHHHHHH ETDTMDTFIQSSWYFLRYTTPKNQRENQAFDQNYLKYFMPVDTYIGGIEHAILHLLYARF HHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FTKALRDLGYLNLDEPFKQLITQGMVLKDGAKMSKSKGNVVSPKEILKKYGADAARLFIL HHHHHHHCCCCCCCHHHHHHHHCCCEEECCCHHCCCCCCCCCHHHHHHHHCCCCEEEEEE FAAPPAKELEWNDNALEGAHRFIKRLYDKASAINPTTSKPEFKEVSLNEAEKLGRKKVYE EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHHHHHHHHHHHH ALKKSHEIFNKAESAYSFNTLIASCMEALNALSAQNNERILCEGYFVLLQILEPIIPHTA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHCCHH WELSERLFKRENFKPIAIDESAFVEDFMTLGLTINGKRRAELKVSINADKEEIIILAKKE HHHHHHHHHHCCCCCEEECHHHHHHHHHHHCEEECCCEEEEEEEEECCCCCCEEEEEHHH LEKYLENASVKKEIYVPNKLVNFVIA HHHHHHCCCCCEEEECCHHHHHHHCC >Mature Secondary Structure MDFINIEKKWQEFWWKNKSFEPKDDFNLPKKYILSMLPYPSGEIHMGHVRNYTIGDALAR CCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEEECCCCCCCHHHHHHH YYRLHHYNVLHPMGFDSFGMPAENAAIKHGIHPKTWTYENIENMQKEFETLGFSFSKNRE HHHHHHCCEECCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCC FATSDPDYTKFEQQFFIDLWEKGLVYRKKAMLNWCPNDKTVLANEQVIDGRCWRCDTEVI CCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCEEEECCCEECCCCCCCCHHHH QKELYQYYLKITNYAEELLKDLKALENHWPSQVLIMQKNWIGKSSGLQFGFKIADECLKA HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHH CNGIQEIEVFTTRADTIYGITFIAIAPEHPLVEHAIKQVSQEDSKMIKAILNTTQRERAL HCCCEEEEEEEECCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EKKGAFLGIYAIHPLTKQKIPVWVANFALAHYGSGALMGVPACDERDFEFANLYHIPIKV HHCCCEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEECCCCCCCCCCCEEEEEEEEEEE ITQSPQNLPHTKEEVLKNSGEWSDLSSSVAREKIIAYFEKENLGKRVINYRLQDWGVSRQ EECCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH RYWGAPIPMIHCKHCGIVPETQLPVTLPEDIVIDGEGNPLEKHASWKFAQCPKCHKNALR HCCCCCCCEEEECCCCCCCCCCCCEECCCCEEECCCCCCCHHHCCCCCCCCCHHHHHHHH ETDTMDTFIQSSWYFLRYTTPKNQRENQAFDQNYLKYFMPVDTYIGGIEHAILHLLYARF HHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FTKALRDLGYLNLDEPFKQLITQGMVLKDGAKMSKSKGNVVSPKEILKKYGADAARLFIL HHHHHHHCCCCCCCHHHHHHHHCCCEEECCCHHCCCCCCCCCHHHHHHHHCCCCEEEEEE FAAPPAKELEWNDNALEGAHRFIKRLYDKASAINPTTSKPEFKEVSLNEAEKLGRKKVYE EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHHHHHHHHHHHH ALKKSHEIFNKAESAYSFNTLIASCMEALNALSAQNNERILCEGYFVLLQILEPIIPHTA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHCCHH WELSERLFKRENFKPIAIDESAFVEDFMTLGLTINGKRRAELKVSINADKEEIIILAKKE HHHHHHHHHHCCCCCEEECHHHHHHHHHHHCEEECCCEEEEEEEEECCCCCCEEEEEHHH LEKYLENASVKKEIYVPNKLVNFVIA HHHHHHCCCCCEEEECCHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA