Click here to switch to the map view.

The map label for this gene is 188528317

Identifier: 188528317

GI number: 188528317

Start: 1550611

End: 1551918

Strand: Direct

Name: 188528317

Synonym: HPSH_07945

Alternate gene names: NA

Gene position: 1550611-1551918 (Clockwise)

Preceding gene: 188528316

Following gene: 188528318

Centisome position: 96.4

GC content: 32.19

Gene sequence:

>1308_bases
ATGAAATTTTTTCTTTTAAAGAAATTCAGCGAATTTTTAAACGCTCAAACGCATTTTAACCTCAAACGCTTGAGCGCATC
TGGTTTTTTATTAGAGACTTTTTCTAAAGAAAAACACGCCTTTGTTGTAGATTTGAACGCGCCTTATATCGGTTTGTCAA
AAAAACCCCCAGAGAGCGTTTTAAAAAACACCCTAGCGTTAGATTTTTGTTTGAATAAATTCACTAAAAACGCCAAAATC
TTACAAGCAAACATCATTGATAACGATCGGATTTTAGAAATCACAGGCGCTAAAGATTTGGCTTATAAGAGTGAAAATTT
TATTTTGCGTTTAGAAATGATCCCTAAAAAAGCCAATCTCATGATTTTAGATAAAGAAAAATGTGTGATAGAAGCCTTTC
GTTTTAATGATAGGGTCGCTAAAAACGATATTTTAGGGGCATTGCCTCCTAATACATACGAGCATCAAGAAAGGGATTTG
GATTTTAAGGGATTGTTAGACATTTTAGAAAAAGATTTTTTATCCTATCAGCATAAAGAATTAGAACACAAAAAAAATCA
CATCATCAAGCGATTAAATATGCAAAAAGAACGCTTGAAAGAAAAATTAGAAAAACTAGAAGATCCTAAAAATTTACAAT
TGGAAGCGAAAGAATTGCAAACTCAAGCTTCGCTATTGCTCACTTACCAGCATTTAATCAATAAGCATGAAAGTCGCGTG
GTTTTAAAGGATTTTGAAGATAAAGAATGCGCGATTGAAATTGATAAGAGCATGCCCTTAAACGCTTTTATCAATAAAAA
ATTCACTCTCAGCAAAAAAAAGAAACAAAAATCGCAATTCTTGTATTTAGAAGAAGAGAATCTAAAAGAAAAAATCGCTT
TTAAAGAAAATCAAATTAATTATGTTAAAGGAGCGCAAGAAGAAAGCGTTTTAGAAATGTTTATGCCGGTAAAAAATTCT
AAAATCAAACGCCCGATGAGCGGGTATGAAGTGCTGTATTATAAGGATTTTAAAATCGGTTTAGGGAAAAACCAAAAAGA
AAATATCAAACTCTTACAAGACGCAAGAGCGAATGATTTATGGATGCATGTAAGAGGTATTCCTGGATCGCATTTGATCG
TTTTTTGCCAAAAGAATACACCCAGAGATGAGATCATTATGGAATTAGCCAAAATGTTGATTAAAATGCAAAAAGATGCG
TTTAATAGTTACGAAATTGACTACACGCAACGAAAATTTGTCAAAATCATCAAAGGAGCTAATGTCATTTACTCAAAATA
CCGAACTATTAGTCTAAAGGACACTTAA

Upstream 100 bases:

>100_bases
ATAACGAAGAAAGGGTTTTAGAAATCGCGCGCATGATAGGGGGGAGCGAGAATATAGAGAGCGCGATTTCTTTCGCTAAA
GAAAAATTAAAGGCGCAAGA

Downstream 100 bases:

>100_bases
ACACTTAAGGAGGTTAGCATGGGTGTTTCAGCTTTAGGCAATGTAACTTATATCAACCAAAACGCTCCTTTAAATTCTGC
TATCCAACAGGGTGCGAGGA

Product: fibronectin/fibrinogen-binding protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 435; Mature: 435

Protein sequence:

>435_residues
MKFFLLKKFSEFLNAQTHFNLKRLSASGFLLETFSKEKHAFVVDLNAPYIGLSKKPPESVLKNTLALDFCLNKFTKNAKI
LQANIIDNDRILEITGAKDLAYKSENFILRLEMIPKKANLMILDKEKCVIEAFRFNDRVAKNDILGALPPNTYEHQERDL
DFKGLLDILEKDFLSYQHKELEHKKNHIIKRLNMQKERLKEKLEKLEDPKNLQLEAKELQTQASLLLTYQHLINKHESRV
VLKDFEDKECAIEIDKSMPLNAFINKKFTLSKKKKQKSQFLYLEEENLKEKIAFKENQINYVKGAQEESVLEMFMPVKNS
KIKRPMSGYEVLYYKDFKIGLGKNQKENIKLLQDARANDLWMHVRGIPGSHLIVFCQKNTPRDEIIMELAKMLIKMQKDA
FNSYEIDYTQRKFVKIIKGANVIYSKYRTISLKDT

Sequences:

>Translated_435_residues
MKFFLLKKFSEFLNAQTHFNLKRLSASGFLLETFSKEKHAFVVDLNAPYIGLSKKPPESVLKNTLALDFCLNKFTKNAKI
LQANIIDNDRILEITGAKDLAYKSENFILRLEMIPKKANLMILDKEKCVIEAFRFNDRVAKNDILGALPPNTYEHQERDL
DFKGLLDILEKDFLSYQHKELEHKKNHIIKRLNMQKERLKEKLEKLEDPKNLQLEAKELQTQASLLLTYQHLINKHESRV
VLKDFEDKECAIEIDKSMPLNAFINKKFTLSKKKKQKSQFLYLEEENLKEKIAFKENQINYVKGAQEESVLEMFMPVKNS
KIKRPMSGYEVLYYKDFKIGLGKNQKENIKLLQDARANDLWMHVRGIPGSHLIVFCQKNTPRDEIIMELAKMLIKMQKDA
FNSYEIDYTQRKFVKIIKGANVIYSKYRTISLKDT
>Mature_435_residues
MKFFLLKKFSEFLNAQTHFNLKRLSASGFLLETFSKEKHAFVVDLNAPYIGLSKKPPESVLKNTLALDFCLNKFTKNAKI
LQANIIDNDRILEITGAKDLAYKSENFILRLEMIPKKANLMILDKEKCVIEAFRFNDRVAKNDILGALPPNTYEHQERDL
DFKGLLDILEKDFLSYQHKELEHKKNHIIKRLNMQKERLKEKLEKLEDPKNLQLEAKELQTQASLLLTYQHLINKHESRV
VLKDFEDKECAIEIDKSMPLNAFINKKFTLSKKKKQKSQFLYLEEENLKEKIAFKENQINYVKGAQEESVLEMFMPVKNS
KIKRPMSGYEVLYYKDFKIGLGKNQKENIKLLQDARANDLWMHVRGIPGSHLIVFCQKNTPRDEIIMELAKMLIKMQKDA
FNSYEIDYTQRKFVKIIKGANVIYSKYRTISLKDT

Specific function: Unknown

COG id: COG1293

COG function: function code K; Predicted RNA-binding protein homologous to eukaryotic snRNP

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 51041; Mature: 51041

Theoretical pI: Translated: 9.93; Mature: 9.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFFLLKKFSEFLNAQTHFNLKRLSASGFLLETFSKEKHAFVVDLNAPYIGLSKKPPESV
CCCHHHHHHHHHHCCHHCCCEEEECCCCCEEECCCCCCCEEEEECCCCEECCCCCCHHHH
LKNTLALDFCLNKFTKNAKILQANIIDNDRILEITGAKDLAYKSENFILRLEMIPKKANL
HHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEEECCCHHEECCCCEEEEEEECCCCCCE
MILDKEKCVIEAFRFNDRVAKNDILGALPPNTYEHQERDLDFKGLLDILEKDFLSYQHKE
EEEECCHHHHHHHHCCCCHHCCCCCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHH
LEHKKNHIIKRLNMQKERLKEKLEKLEDPKNLQLEAKELQTQASLLLTYQHLINKHESRV
HHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHCCCCCEE
VLKDFEDKECAIEIDKSMPLNAFINKKFTLSKKKKQKSQFLYLEEENLKEKIAFKENQIN
EEECCCCCCEEEEECCCCCCHHHHCCCEEECHHHHCHHHEEEEEHHCHHHHHHHCCCCCH
YVKGAQEESVLEMFMPVKNSKIKRPMSGYEVLYYKDFKIGLGKNQKENIKLLQDARANDL
HHCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCHHHHHCCCCCCE
WMHVRGIPGSHLIVFCQKNTPRDEIIMELAKMLIKMQKDAFNSYEIDYTQRKFVKIIKGA
EEEEECCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCEECCHHHHHHHHHHHCC
NVIYSKYRTISLKDT
CEEEECEEEEEECCC
>Mature Secondary Structure
MKFFLLKKFSEFLNAQTHFNLKRLSASGFLLETFSKEKHAFVVDLNAPYIGLSKKPPESV
CCCHHHHHHHHHHCCHHCCCEEEECCCCCEEECCCCCCCEEEEECCCCEECCCCCCHHHH
LKNTLALDFCLNKFTKNAKILQANIIDNDRILEITGAKDLAYKSENFILRLEMIPKKANL
HHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEEECCCHHEECCCCEEEEEEECCCCCCE
MILDKEKCVIEAFRFNDRVAKNDILGALPPNTYEHQERDLDFKGLLDILEKDFLSYQHKE
EEEECCHHHHHHHHCCCCHHCCCCCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHH
LEHKKNHIIKRLNMQKERLKEKLEKLEDPKNLQLEAKELQTQASLLLTYQHLINKHESRV
HHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHCCCCCEE
VLKDFEDKECAIEIDKSMPLNAFINKKFTLSKKKKQKSQFLYLEEENLKEKIAFKENQIN
EEECCCCCCEEEEECCCCCCHHHHCCCEEECHHHHCHHHEEEEEHHCHHHHHHHCCCCCH
YVKGAQEESVLEMFMPVKNSKIKRPMSGYEVLYYKDFKIGLGKNQKENIKLLQDARANDL
HHCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCHHHHHCCCCCCE
WMHVRGIPGSHLIVFCQKNTPRDEIIMELAKMLIKMQKDAFNSYEIDYTQRKFVKIIKGA
EEEEECCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCEECCHHHHHHHHHHHCC
NVIYSKYRTISLKDT
CEEEECEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA