| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is fecA [H]
Identifier: 188528309
GI number: 188528309
Start: 1540052
End: 1542577
Strand: Reverse
Name: fecA [H]
Synonym: HPSH_07905
Alternate gene names: 188528309
Gene position: 1542577-1540052 (Counterclockwise)
Preceding gene: 188528311
Following gene: 188528306
Centisome position: 95.9
GC content: 45.65
Gene sequence:
>2526_bases TTGCATAAAAAAGTTCTGTTGGCTTTAACTGCCAGCTTGATTTGCCAAGAGTCCTTGTTCGCTAAAGATAAAGACTACAC TTTGGGCAAGGTTTCTACTGCCGGGAAAAAGGATAAATCTGATTATTCTGGGCAGGTCAATTTGGGTTATAGCGGGATCA CCGCGCCTAAGAGTTGGCAAGATGAAGAAGTGAAAAAATACACAGGAAGCCGCACGGTGATCTCTAATAAAGCGCTCACC CAACAAGCTAACCAAAGCATTGAAGAAGCTTTACAGAATGTCCCAGGTCTGCAAATTAGGAATGCGACAGGTGTAGGGGC TATGCCTACTATCCAAATCCGTGGCTTTGGGGCTGGGGGTTCAGGGCATAGCGATGCGACGCTTATGTTAGTTAATGGTA TTCCTGTTTATATGGCCCCCTACGCTCACATTGAGTTAGACATTTTCCCCGTTACCTTTCAAGCCATTGATCGCATTGAT GTGATCAAAGGTGGAGGCAGCGTGCAATATGGGCCTAACACTTATGGAGGTATCGTCAATATCATCACTAAGCCTATCCC TAATCAATGGGAAAACCAAGCGGCTGAAAGGATCACTTATTGGGCTAAGGCTAGAAACGCCGGGTTTGCCGCTCCCCCTG ATAAAACCGGCGATCCTTCTTTCATCAAGTCTTTAGGCAATAACCTCCTCTATAACACTTATGTGAGATCGGGAGGGATG ATCAATAAGCATGTGGGTATCCAAGCGCAAGCTAACTGGGTTAGAGGGCAAGGCTTTAGAGACAATAGCCCTTCTAGTAT TTCAAACTATTGGCTAGATGGGGTCTATGACATCAACGAAAACAACGGGATTAAAGCCTATTACCAATACTACGATTTTG CTATCGCTCAACCGGGATCACTCAGCGAGCAAGATTACAAAATAAACCGCTTCGCTAATTTACGCCCTCTCAACCAAAAA GGCGGGCGCTCACAACGCTTTGGGGCTGTGTATGAAAACCGCTTTGGGGATTTAGACAAAGTGGGCGGGACTTTCAGCTT CACTTACTATGGGCAGTTGATGACTAGGGACTTTCAGGTGAGCTCTAGCTACAATAGCGCTAACACGGTTACTTGTTTTA GCGAAGCGGCATGTAGGGCGGCGGGACTTCCGGCAGGGTATAACTTGGCTGTGCCTTATTATGCCACCAACTACAATGGT TGGGCAGAAGTAGAAAACCCTGTGCGCTCCATTAACAACGCTTTTGAGCCTAAAGTGAGTTTGATCGTCAATACCGGGAA AGTCAGGCAAACCTTTATCATGGGCTTGCGTTTCATGACCACCACTTTTTTACAACGCCAATACTTAAACACCAATGAAT GCCCCACCAAAACGAGCGGTGAGGGGGCAGGATTCTTGTGTGAGGGCGCTAATGTGATGAGCGGTTGGAAACCCCACATC AAGCATGGCGTTTATAGAAACTGGAATAACTGGCGCAACAATTACACAGCAGTTTATTTGAGCGATCGCATTGAAGCTTG GGACGGGCGCTTTTTCATCGTGCCTGGTTTGCGCTACGCTTTTGTGCAATACAACAACGAGAATGCAGCTAACTGGATGC AAATCCCTGAGAAGGATTTAAGAAAAATCAAGCACATGAACAATTGGATGCCCTCAACCAACATTGGCTTTATCCCTGTG CAAGGCGATCACAATGTGCTTACCTACTTTAACTACCAACGCTCTTTTGTCCCGCCTCAATTAGATGTTTTGAGCTATGG AGGAGCGGAGTATTTTACCCAACACTTTGACACTGTAGAAGCAGGAGCGCGCTACACCTATAAGGATAAGTTTAGCTTCA ATGCGGACTATTTTAGGATTTGGGCGCGCGATTTTGCCACCGGGCAGTATTCAGTCTATACAAGCGGCCCTATGAAAGGT AATGTGCGCCCCGTTAATGGCTATTCTCAAGGCGTGGAGCTGGAATTGTATTATAGGCCTATTAGAGGGTTGCAATTCCA TGCCGCTTTCAACTACATTGACACTCGTGTAACCAGCCATGGCCCTTTAACAGACTTGAATGGGGATGTGCTAAAAGGGA CTAGCTATAACAAGCATTTCCCTTTTGTAAGCCCTTTCCAGTTCATTTTTGACGCTCGTTACAATTGGCGTAAAACCACC ATTGGTATTTCTAGCTATTTTTATAGTCGCGCTTATAGCGGGATTAGCAACAGCGCAGCAGGAGGCTATTATGGGATGCA ATATTATAGTGGGGGGAACAACTATGAAAGCGTTCTCAATAGCGGTTATCAATGCGAAGCTTGGTGTATGACCCAACATG AAGGGCTATTGCCTTGGTATTGGGTGTGGAATATCCAAGTGAGCCAAATTTTCTGGGAAAACGGAAGACACAGAGTTACA GGAAGTTTGCAAATCAATAATATCTTCAACATGAAGTATTATTTTACAGGGATTGGCTCTAGCCCCGCAGGCTTGCAACC TGGACCTGGAAGATCAGTTACAGCGTATTTGAACTACACTTTCTAA
Upstream 100 bases:
>100_bases TTTTGTTTTTATTACTTAATAATTGGCGTTCGTTATCGGTTTGATTTTACTTAAAAAACTTAAACCATTTTTTAATCTCT TAAAATATAAGGAGTTTGTG
Downstream 100 bases:
>100_bases AGGCTTTAAAAAGGAGGGGGATTATTACGCTATGATGAGCCGCTCAAATGAGCCGCTTAGCGGTTTTATTGAAATGATGG AATCTTCGTTTAAGAGCACT
Product: iron(III) dicitrate transport protein (fecA)
Products: NA
Alternate protein names: Iron(III) dicitrate transport protein fecA [H]
Number of amino acids: Translated: 841; Mature: 841
Protein sequence:
>841_residues MHKKVLLALTASLICQESLFAKDKDYTLGKVSTAGKKDKSDYSGQVNLGYSGITAPKSWQDEEVKKYTGSRTVISNKALT QQANQSIEEALQNVPGLQIRNATGVGAMPTIQIRGFGAGGSGHSDATLMLVNGIPVYMAPYAHIELDIFPVTFQAIDRID VIKGGGSVQYGPNTYGGIVNIITKPIPNQWENQAAERITYWAKARNAGFAAPPDKTGDPSFIKSLGNNLLYNTYVRSGGM INKHVGIQAQANWVRGQGFRDNSPSSISNYWLDGVYDINENNGIKAYYQYYDFAIAQPGSLSEQDYKINRFANLRPLNQK GGRSQRFGAVYENRFGDLDKVGGTFSFTYYGQLMTRDFQVSSSYNSANTVTCFSEAACRAAGLPAGYNLAVPYYATNYNG WAEVENPVRSINNAFEPKVSLIVNTGKVRQTFIMGLRFMTTTFLQRQYLNTNECPTKTSGEGAGFLCEGANVMSGWKPHI KHGVYRNWNNWRNNYTAVYLSDRIEAWDGRFFIVPGLRYAFVQYNNENAANWMQIPEKDLRKIKHMNNWMPSTNIGFIPV QGDHNVLTYFNYQRSFVPPQLDVLSYGGAEYFTQHFDTVEAGARYTYKDKFSFNADYFRIWARDFATGQYSVYTSGPMKG NVRPVNGYSQGVELELYYRPIRGLQFHAAFNYIDTRVTSHGPLTDLNGDVLKGTSYNKHFPFVSPFQFIFDARYNWRKTT IGISSYFYSRAYSGISNSAAGGYYGMQYYSGGNNYESVLNSGYQCEAWCMTQHEGLLPWYWVWNIQVSQIFWENGRHRVT GSLQINNIFNMKYYFTGIGSSPAGLQPGPGRSVTAYLNYTF
Sequences:
>Translated_841_residues MHKKVLLALTASLICQESLFAKDKDYTLGKVSTAGKKDKSDYSGQVNLGYSGITAPKSWQDEEVKKYTGSRTVISNKALT QQANQSIEEALQNVPGLQIRNATGVGAMPTIQIRGFGAGGSGHSDATLMLVNGIPVYMAPYAHIELDIFPVTFQAIDRID VIKGGGSVQYGPNTYGGIVNIITKPIPNQWENQAAERITYWAKARNAGFAAPPDKTGDPSFIKSLGNNLLYNTYVRSGGM INKHVGIQAQANWVRGQGFRDNSPSSISNYWLDGVYDINENNGIKAYYQYYDFAIAQPGSLSEQDYKINRFANLRPLNQK GGRSQRFGAVYENRFGDLDKVGGTFSFTYYGQLMTRDFQVSSSYNSANTVTCFSEAACRAAGLPAGYNLAVPYYATNYNG WAEVENPVRSINNAFEPKVSLIVNTGKVRQTFIMGLRFMTTTFLQRQYLNTNECPTKTSGEGAGFLCEGANVMSGWKPHI KHGVYRNWNNWRNNYTAVYLSDRIEAWDGRFFIVPGLRYAFVQYNNENAANWMQIPEKDLRKIKHMNNWMPSTNIGFIPV QGDHNVLTYFNYQRSFVPPQLDVLSYGGAEYFTQHFDTVEAGARYTYKDKFSFNADYFRIWARDFATGQYSVYTSGPMKG NVRPVNGYSQGVELELYYRPIRGLQFHAAFNYIDTRVTSHGPLTDLNGDVLKGTSYNKHFPFVSPFQFIFDARYNWRKTT IGISSYFYSRAYSGISNSAAGGYYGMQYYSGGNNYESVLNSGYQCEAWCMTQHEGLLPWYWVWNIQVSQIFWENGRHRVT GSLQINNIFNMKYYFTGIGSSPAGLQPGPGRSVTAYLNYTF >Mature_841_residues MHKKVLLALTASLICQESLFAKDKDYTLGKVSTAGKKDKSDYSGQVNLGYSGITAPKSWQDEEVKKYTGSRTVISNKALT QQANQSIEEALQNVPGLQIRNATGVGAMPTIQIRGFGAGGSGHSDATLMLVNGIPVYMAPYAHIELDIFPVTFQAIDRID VIKGGGSVQYGPNTYGGIVNIITKPIPNQWENQAAERITYWAKARNAGFAAPPDKTGDPSFIKSLGNNLLYNTYVRSGGM INKHVGIQAQANWVRGQGFRDNSPSSISNYWLDGVYDINENNGIKAYYQYYDFAIAQPGSLSEQDYKINRFANLRPLNQK GGRSQRFGAVYENRFGDLDKVGGTFSFTYYGQLMTRDFQVSSSYNSANTVTCFSEAACRAAGLPAGYNLAVPYYATNYNG WAEVENPVRSINNAFEPKVSLIVNTGKVRQTFIMGLRFMTTTFLQRQYLNTNECPTKTSGEGAGFLCEGANVMSGWKPHI KHGVYRNWNNWRNNYTAVYLSDRIEAWDGRFFIVPGLRYAFVQYNNENAANWMQIPEKDLRKIKHMNNWMPSTNIGFIPV QGDHNVLTYFNYQRSFVPPQLDVLSYGGAEYFTQHFDTVEAGARYTYKDKFSFNADYFRIWARDFATGQYSVYTSGPMKG NVRPVNGYSQGVELELYYRPIRGLQFHAAFNYIDTRVTSHGPLTDLNGDVLKGTSYNKHFPFVSPFQFIFDARYNWRKTT IGISSYFYSRAYSGISNSAAGGYYGMQYYSGGNNYESVLNSGYQCEAWCMTQHEGLLPWYWVWNIQVSQIFWENGRHRVT GSLQINNIFNMKYYFTGIGSSPAGLQPGPGRSVTAYLNYTF
Specific function: FecA is the outer membrane receptor protein in the Fe(3+) dicitrate transport system [H]
COG id: COG4772
COG function: function code P; Outer membrane receptor for Fe3+-dicitrate
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1790743, Length=470, Percent_Identity=23.4042553191489, Blast_Score=115, Evalue=1e-26, Organism=Escherichia coli, GI1788478, Length=132, Percent_Identity=32.5757575757576, Blast_Score=69, Evalue=1e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR011662 - InterPro: IPR000531 - InterPro: IPR010916 - InterPro: IPR010917 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF07660 STN; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 94633; Mature: 94633
Theoretical pI: Translated: 9.28; Mature: 9.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHKKVLLALTASLICQESLFAKDKDYTLGKVSTAGKKDKSDYSGQVNLGYSGITAPKSWQ CCCEEEHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCEEEECCCCCCCCCCCC DEEVKKYTGSRTVISNKALTQQANQSIEEALQNVPGLQIRNATGVGAMPTIQIRGFGAGG HHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCEEEEEEECCCC SGHSDATLMLVNGIPVYMAPYAHIELDIFPVTFQAIDRIDVIKGGGSVQYGPNTYGGIVN CCCCCEEEEEEECCCEEECCEEEEEEEEEEEEHHHHCCEEEEECCCCEEECCCCCCCHHE IITKPIPNQWENQAAERITYWAKARNAGFAAPPDKTGDPSFIKSLGNNLLYNTYVRSGGM EECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEECCCCE INKHVGIQAQANWVRGQGFRDNSPSSISNYWLDGVYDINENNGIKAYYQYYDFAIAQPGS EEEEECCEEECCEEECCCCCCCCCCCHHHHCCCEEEEECCCCCEEEEEEEEEEEEECCCC LSEQDYKINRFANLRPLNQKGGRSQRFGAVYENRFGDLDKVGGTFSFTYYGQLMTRDFQV CCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHCCCCHHHCCCEEEEEEEEEEEEEEEEE SSSYNSANTVTCFSEAACRAAGLPAGYNLAVPYYATNYNGWAEVENPVRSINNAFEPKVS ECCCCCCCEEEEEHHHHHHHCCCCCCCEEEECEEECCCCCCHHHHHHHHHHHHCCCCEEE LIVNTGKVRQTFIMGLRFMTTTFLQRQYLNTNECPTKTSGEGAGFLCEGANVMSGWKPHI EEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHH KHGVYRNWNNWRNNYTAVYLSDRIEAWDGRFFIVPGLRYAFVQYNNENAANWMQIPEKDL HCCCCCCCCCCCCCEEEEEEECCEECCCCCEEEECCCEEEEEEECCCCCCHHHCCCHHHH RKIKHMNNWMPSTNIGFIPVQGDHNVLTYFNYQRSFVPPQLDVLSYGGAEYFTQHFDTVE HHHHHHHCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCEEEEECCCHHHHHHHHHHHH AGARYTYKDKFSFNADYFRIWARDFATGQYSVYTSGPMKGNVRPVNGYSQGVELELYYRP CCCEEEEECCCCCCCCEEEEEEHHCCCCEEEEEECCCCCCCEEECCCCCCCEEEEEEEEC IRGLQFHAAFNYIDTRVTSHGPLTDLNGDVLKGTSYNKHFPFVSPFQFIFDARYNWRKTT CCCEEEEEEHHHHHHEECCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHCCCCCCEEEE IGISSYFYSRAYSGISNSAAGGYYGMQYYSGGNNYESVLNSGYQCEAWCMTQHEGLLPWY EEHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCHHHHHCCCCEEEEEEEECCCCCCEEE WVWNIQVSQIFWENGRHRVTGSLQINNIFNMKYYFTGIGSSPAGLQPGPGRSVTAYLNYT EEEEEEEEEEEECCCCEEEEEEEEEEEEEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEC F C >Mature Secondary Structure MHKKVLLALTASLICQESLFAKDKDYTLGKVSTAGKKDKSDYSGQVNLGYSGITAPKSWQ CCCEEEHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCEEEECCCCCCCCCCCC DEEVKKYTGSRTVISNKALTQQANQSIEEALQNVPGLQIRNATGVGAMPTIQIRGFGAGG HHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCEEEEEEECCCC SGHSDATLMLVNGIPVYMAPYAHIELDIFPVTFQAIDRIDVIKGGGSVQYGPNTYGGIVN CCCCCEEEEEEECCCEEECCEEEEEEEEEEEEHHHHCCEEEEECCCCEEECCCCCCCHHE IITKPIPNQWENQAAERITYWAKARNAGFAAPPDKTGDPSFIKSLGNNLLYNTYVRSGGM EECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEECCCCE INKHVGIQAQANWVRGQGFRDNSPSSISNYWLDGVYDINENNGIKAYYQYYDFAIAQPGS EEEEECCEEECCEEECCCCCCCCCCCHHHHCCCEEEEECCCCCEEEEEEEEEEEEECCCC LSEQDYKINRFANLRPLNQKGGRSQRFGAVYENRFGDLDKVGGTFSFTYYGQLMTRDFQV CCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHCCCCHHHCCCEEEEEEEEEEEEEEEEE SSSYNSANTVTCFSEAACRAAGLPAGYNLAVPYYATNYNGWAEVENPVRSINNAFEPKVS ECCCCCCCEEEEEHHHHHHHCCCCCCCEEEECEEECCCCCCHHHHHHHHHHHHCCCCEEE LIVNTGKVRQTFIMGLRFMTTTFLQRQYLNTNECPTKTSGEGAGFLCEGANVMSGWKPHI EEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHH KHGVYRNWNNWRNNYTAVYLSDRIEAWDGRFFIVPGLRYAFVQYNNENAANWMQIPEKDL HCCCCCCCCCCCCCEEEEEEECCEECCCCCEEEECCCEEEEEEECCCCCCHHHCCCHHHH RKIKHMNNWMPSTNIGFIPVQGDHNVLTYFNYQRSFVPPQLDVLSYGGAEYFTQHFDTVE HHHHHHHCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCEEEEECCCHHHHHHHHHHHH AGARYTYKDKFSFNADYFRIWARDFATGQYSVYTSGPMKGNVRPVNGYSQGVELELYYRP CCCEEEEECCCCCCCCEEEEEEHHCCCCEEEEEECCCCCCCEEECCCCCCCEEEEEEEEC IRGLQFHAAFNYIDTRVTSHGPLTDLNGDVLKGTSYNKHFPFVSPFQFIFDARYNWRKTT CCCEEEEEEHHHHHHEECCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHCCCCCCEEEE IGISSYFYSRAYSGISNSAAGGYYGMQYYSGGNNYESVLNSGYQCEAWCMTQHEGLLPWY EEHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCHHHHHCCCCEEEEEEEECCCCCCEEE WVWNIQVSQIFWENGRHRVTGSLQINNIFNMKYYFTGIGSSPAGLQPGPGRSVTAYLNYT EEEEEEEEEEEECCCCEEEEEEEEEEEEEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEC F C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 2836368; 7610040; 9278503; 2254251; 2651410 [H]