Definition Helicobacter pylori Shi470, complete genome.
Accession NC_010698
Length 1,608,548

Click here to switch to the map view.

The map label for this gene is fecA [H]

Identifier: 188528309

GI number: 188528309

Start: 1540052

End: 1542577

Strand: Reverse

Name: fecA [H]

Synonym: HPSH_07905

Alternate gene names: 188528309

Gene position: 1542577-1540052 (Counterclockwise)

Preceding gene: 188528311

Following gene: 188528306

Centisome position: 95.9

GC content: 45.65

Gene sequence:

>2526_bases
TTGCATAAAAAAGTTCTGTTGGCTTTAACTGCCAGCTTGATTTGCCAAGAGTCCTTGTTCGCTAAAGATAAAGACTACAC
TTTGGGCAAGGTTTCTACTGCCGGGAAAAAGGATAAATCTGATTATTCTGGGCAGGTCAATTTGGGTTATAGCGGGATCA
CCGCGCCTAAGAGTTGGCAAGATGAAGAAGTGAAAAAATACACAGGAAGCCGCACGGTGATCTCTAATAAAGCGCTCACC
CAACAAGCTAACCAAAGCATTGAAGAAGCTTTACAGAATGTCCCAGGTCTGCAAATTAGGAATGCGACAGGTGTAGGGGC
TATGCCTACTATCCAAATCCGTGGCTTTGGGGCTGGGGGTTCAGGGCATAGCGATGCGACGCTTATGTTAGTTAATGGTA
TTCCTGTTTATATGGCCCCCTACGCTCACATTGAGTTAGACATTTTCCCCGTTACCTTTCAAGCCATTGATCGCATTGAT
GTGATCAAAGGTGGAGGCAGCGTGCAATATGGGCCTAACACTTATGGAGGTATCGTCAATATCATCACTAAGCCTATCCC
TAATCAATGGGAAAACCAAGCGGCTGAAAGGATCACTTATTGGGCTAAGGCTAGAAACGCCGGGTTTGCCGCTCCCCCTG
ATAAAACCGGCGATCCTTCTTTCATCAAGTCTTTAGGCAATAACCTCCTCTATAACACTTATGTGAGATCGGGAGGGATG
ATCAATAAGCATGTGGGTATCCAAGCGCAAGCTAACTGGGTTAGAGGGCAAGGCTTTAGAGACAATAGCCCTTCTAGTAT
TTCAAACTATTGGCTAGATGGGGTCTATGACATCAACGAAAACAACGGGATTAAAGCCTATTACCAATACTACGATTTTG
CTATCGCTCAACCGGGATCACTCAGCGAGCAAGATTACAAAATAAACCGCTTCGCTAATTTACGCCCTCTCAACCAAAAA
GGCGGGCGCTCACAACGCTTTGGGGCTGTGTATGAAAACCGCTTTGGGGATTTAGACAAAGTGGGCGGGACTTTCAGCTT
CACTTACTATGGGCAGTTGATGACTAGGGACTTTCAGGTGAGCTCTAGCTACAATAGCGCTAACACGGTTACTTGTTTTA
GCGAAGCGGCATGTAGGGCGGCGGGACTTCCGGCAGGGTATAACTTGGCTGTGCCTTATTATGCCACCAACTACAATGGT
TGGGCAGAAGTAGAAAACCCTGTGCGCTCCATTAACAACGCTTTTGAGCCTAAAGTGAGTTTGATCGTCAATACCGGGAA
AGTCAGGCAAACCTTTATCATGGGCTTGCGTTTCATGACCACCACTTTTTTACAACGCCAATACTTAAACACCAATGAAT
GCCCCACCAAAACGAGCGGTGAGGGGGCAGGATTCTTGTGTGAGGGCGCTAATGTGATGAGCGGTTGGAAACCCCACATC
AAGCATGGCGTTTATAGAAACTGGAATAACTGGCGCAACAATTACACAGCAGTTTATTTGAGCGATCGCATTGAAGCTTG
GGACGGGCGCTTTTTCATCGTGCCTGGTTTGCGCTACGCTTTTGTGCAATACAACAACGAGAATGCAGCTAACTGGATGC
AAATCCCTGAGAAGGATTTAAGAAAAATCAAGCACATGAACAATTGGATGCCCTCAACCAACATTGGCTTTATCCCTGTG
CAAGGCGATCACAATGTGCTTACCTACTTTAACTACCAACGCTCTTTTGTCCCGCCTCAATTAGATGTTTTGAGCTATGG
AGGAGCGGAGTATTTTACCCAACACTTTGACACTGTAGAAGCAGGAGCGCGCTACACCTATAAGGATAAGTTTAGCTTCA
ATGCGGACTATTTTAGGATTTGGGCGCGCGATTTTGCCACCGGGCAGTATTCAGTCTATACAAGCGGCCCTATGAAAGGT
AATGTGCGCCCCGTTAATGGCTATTCTCAAGGCGTGGAGCTGGAATTGTATTATAGGCCTATTAGAGGGTTGCAATTCCA
TGCCGCTTTCAACTACATTGACACTCGTGTAACCAGCCATGGCCCTTTAACAGACTTGAATGGGGATGTGCTAAAAGGGA
CTAGCTATAACAAGCATTTCCCTTTTGTAAGCCCTTTCCAGTTCATTTTTGACGCTCGTTACAATTGGCGTAAAACCACC
ATTGGTATTTCTAGCTATTTTTATAGTCGCGCTTATAGCGGGATTAGCAACAGCGCAGCAGGAGGCTATTATGGGATGCA
ATATTATAGTGGGGGGAACAACTATGAAAGCGTTCTCAATAGCGGTTATCAATGCGAAGCTTGGTGTATGACCCAACATG
AAGGGCTATTGCCTTGGTATTGGGTGTGGAATATCCAAGTGAGCCAAATTTTCTGGGAAAACGGAAGACACAGAGTTACA
GGAAGTTTGCAAATCAATAATATCTTCAACATGAAGTATTATTTTACAGGGATTGGCTCTAGCCCCGCAGGCTTGCAACC
TGGACCTGGAAGATCAGTTACAGCGTATTTGAACTACACTTTCTAA

Upstream 100 bases:

>100_bases
TTTTGTTTTTATTACTTAATAATTGGCGTTCGTTATCGGTTTGATTTTACTTAAAAAACTTAAACCATTTTTTAATCTCT
TAAAATATAAGGAGTTTGTG

Downstream 100 bases:

>100_bases
AGGCTTTAAAAAGGAGGGGGATTATTACGCTATGATGAGCCGCTCAAATGAGCCGCTTAGCGGTTTTATTGAAATGATGG
AATCTTCGTTTAAGAGCACT

Product: iron(III) dicitrate transport protein (fecA)

Products: NA

Alternate protein names: Iron(III) dicitrate transport protein fecA [H]

Number of amino acids: Translated: 841; Mature: 841

Protein sequence:

>841_residues
MHKKVLLALTASLICQESLFAKDKDYTLGKVSTAGKKDKSDYSGQVNLGYSGITAPKSWQDEEVKKYTGSRTVISNKALT
QQANQSIEEALQNVPGLQIRNATGVGAMPTIQIRGFGAGGSGHSDATLMLVNGIPVYMAPYAHIELDIFPVTFQAIDRID
VIKGGGSVQYGPNTYGGIVNIITKPIPNQWENQAAERITYWAKARNAGFAAPPDKTGDPSFIKSLGNNLLYNTYVRSGGM
INKHVGIQAQANWVRGQGFRDNSPSSISNYWLDGVYDINENNGIKAYYQYYDFAIAQPGSLSEQDYKINRFANLRPLNQK
GGRSQRFGAVYENRFGDLDKVGGTFSFTYYGQLMTRDFQVSSSYNSANTVTCFSEAACRAAGLPAGYNLAVPYYATNYNG
WAEVENPVRSINNAFEPKVSLIVNTGKVRQTFIMGLRFMTTTFLQRQYLNTNECPTKTSGEGAGFLCEGANVMSGWKPHI
KHGVYRNWNNWRNNYTAVYLSDRIEAWDGRFFIVPGLRYAFVQYNNENAANWMQIPEKDLRKIKHMNNWMPSTNIGFIPV
QGDHNVLTYFNYQRSFVPPQLDVLSYGGAEYFTQHFDTVEAGARYTYKDKFSFNADYFRIWARDFATGQYSVYTSGPMKG
NVRPVNGYSQGVELELYYRPIRGLQFHAAFNYIDTRVTSHGPLTDLNGDVLKGTSYNKHFPFVSPFQFIFDARYNWRKTT
IGISSYFYSRAYSGISNSAAGGYYGMQYYSGGNNYESVLNSGYQCEAWCMTQHEGLLPWYWVWNIQVSQIFWENGRHRVT
GSLQINNIFNMKYYFTGIGSSPAGLQPGPGRSVTAYLNYTF

Sequences:

>Translated_841_residues
MHKKVLLALTASLICQESLFAKDKDYTLGKVSTAGKKDKSDYSGQVNLGYSGITAPKSWQDEEVKKYTGSRTVISNKALT
QQANQSIEEALQNVPGLQIRNATGVGAMPTIQIRGFGAGGSGHSDATLMLVNGIPVYMAPYAHIELDIFPVTFQAIDRID
VIKGGGSVQYGPNTYGGIVNIITKPIPNQWENQAAERITYWAKARNAGFAAPPDKTGDPSFIKSLGNNLLYNTYVRSGGM
INKHVGIQAQANWVRGQGFRDNSPSSISNYWLDGVYDINENNGIKAYYQYYDFAIAQPGSLSEQDYKINRFANLRPLNQK
GGRSQRFGAVYENRFGDLDKVGGTFSFTYYGQLMTRDFQVSSSYNSANTVTCFSEAACRAAGLPAGYNLAVPYYATNYNG
WAEVENPVRSINNAFEPKVSLIVNTGKVRQTFIMGLRFMTTTFLQRQYLNTNECPTKTSGEGAGFLCEGANVMSGWKPHI
KHGVYRNWNNWRNNYTAVYLSDRIEAWDGRFFIVPGLRYAFVQYNNENAANWMQIPEKDLRKIKHMNNWMPSTNIGFIPV
QGDHNVLTYFNYQRSFVPPQLDVLSYGGAEYFTQHFDTVEAGARYTYKDKFSFNADYFRIWARDFATGQYSVYTSGPMKG
NVRPVNGYSQGVELELYYRPIRGLQFHAAFNYIDTRVTSHGPLTDLNGDVLKGTSYNKHFPFVSPFQFIFDARYNWRKTT
IGISSYFYSRAYSGISNSAAGGYYGMQYYSGGNNYESVLNSGYQCEAWCMTQHEGLLPWYWVWNIQVSQIFWENGRHRVT
GSLQINNIFNMKYYFTGIGSSPAGLQPGPGRSVTAYLNYTF
>Mature_841_residues
MHKKVLLALTASLICQESLFAKDKDYTLGKVSTAGKKDKSDYSGQVNLGYSGITAPKSWQDEEVKKYTGSRTVISNKALT
QQANQSIEEALQNVPGLQIRNATGVGAMPTIQIRGFGAGGSGHSDATLMLVNGIPVYMAPYAHIELDIFPVTFQAIDRID
VIKGGGSVQYGPNTYGGIVNIITKPIPNQWENQAAERITYWAKARNAGFAAPPDKTGDPSFIKSLGNNLLYNTYVRSGGM
INKHVGIQAQANWVRGQGFRDNSPSSISNYWLDGVYDINENNGIKAYYQYYDFAIAQPGSLSEQDYKINRFANLRPLNQK
GGRSQRFGAVYENRFGDLDKVGGTFSFTYYGQLMTRDFQVSSSYNSANTVTCFSEAACRAAGLPAGYNLAVPYYATNYNG
WAEVENPVRSINNAFEPKVSLIVNTGKVRQTFIMGLRFMTTTFLQRQYLNTNECPTKTSGEGAGFLCEGANVMSGWKPHI
KHGVYRNWNNWRNNYTAVYLSDRIEAWDGRFFIVPGLRYAFVQYNNENAANWMQIPEKDLRKIKHMNNWMPSTNIGFIPV
QGDHNVLTYFNYQRSFVPPQLDVLSYGGAEYFTQHFDTVEAGARYTYKDKFSFNADYFRIWARDFATGQYSVYTSGPMKG
NVRPVNGYSQGVELELYYRPIRGLQFHAAFNYIDTRVTSHGPLTDLNGDVLKGTSYNKHFPFVSPFQFIFDARYNWRKTT
IGISSYFYSRAYSGISNSAAGGYYGMQYYSGGNNYESVLNSGYQCEAWCMTQHEGLLPWYWVWNIQVSQIFWENGRHRVT
GSLQINNIFNMKYYFTGIGSSPAGLQPGPGRSVTAYLNYTF

Specific function: FecA is the outer membrane receptor protein in the Fe(3+) dicitrate transport system [H]

COG id: COG4772

COG function: function code P; Outer membrane receptor for Fe3+-dicitrate

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tonB-dependent receptor family [H]

Homologues:

Organism=Escherichia coli, GI1790743, Length=470, Percent_Identity=23.4042553191489, Blast_Score=115, Evalue=1e-26,
Organism=Escherichia coli, GI1788478, Length=132, Percent_Identity=32.5757575757576, Blast_Score=69, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012910
- InterPro:   IPR011662
- InterPro:   IPR000531
- InterPro:   IPR010916
- InterPro:   IPR010917
- InterPro:   IPR010105 [H]

Pfam domain/function: PF07715 Plug; PF07660 STN; PF00593 TonB_dep_Rec [H]

EC number: NA

Molecular weight: Translated: 94633; Mature: 94633

Theoretical pI: Translated: 9.28; Mature: 9.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHKKVLLALTASLICQESLFAKDKDYTLGKVSTAGKKDKSDYSGQVNLGYSGITAPKSWQ
CCCEEEHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCEEEECCCCCCCCCCCC
DEEVKKYTGSRTVISNKALTQQANQSIEEALQNVPGLQIRNATGVGAMPTIQIRGFGAGG
HHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCEEEEEEECCCC
SGHSDATLMLVNGIPVYMAPYAHIELDIFPVTFQAIDRIDVIKGGGSVQYGPNTYGGIVN
CCCCCEEEEEEECCCEEECCEEEEEEEEEEEEHHHHCCEEEEECCCCEEECCCCCCCHHE
IITKPIPNQWENQAAERITYWAKARNAGFAAPPDKTGDPSFIKSLGNNLLYNTYVRSGGM
EECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEECCCCE
INKHVGIQAQANWVRGQGFRDNSPSSISNYWLDGVYDINENNGIKAYYQYYDFAIAQPGS
EEEEECCEEECCEEECCCCCCCCCCCHHHHCCCEEEEECCCCCEEEEEEEEEEEEECCCC
LSEQDYKINRFANLRPLNQKGGRSQRFGAVYENRFGDLDKVGGTFSFTYYGQLMTRDFQV
CCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHCCCCHHHCCCEEEEEEEEEEEEEEEEE
SSSYNSANTVTCFSEAACRAAGLPAGYNLAVPYYATNYNGWAEVENPVRSINNAFEPKVS
ECCCCCCCEEEEEHHHHHHHCCCCCCCEEEECEEECCCCCCHHHHHHHHHHHHCCCCEEE
LIVNTGKVRQTFIMGLRFMTTTFLQRQYLNTNECPTKTSGEGAGFLCEGANVMSGWKPHI
EEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHH
KHGVYRNWNNWRNNYTAVYLSDRIEAWDGRFFIVPGLRYAFVQYNNENAANWMQIPEKDL
HCCCCCCCCCCCCCEEEEEEECCEECCCCCEEEECCCEEEEEEECCCCCCHHHCCCHHHH
RKIKHMNNWMPSTNIGFIPVQGDHNVLTYFNYQRSFVPPQLDVLSYGGAEYFTQHFDTVE
HHHHHHHCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCEEEEECCCHHHHHHHHHHHH
AGARYTYKDKFSFNADYFRIWARDFATGQYSVYTSGPMKGNVRPVNGYSQGVELELYYRP
CCCEEEEECCCCCCCCEEEEEEHHCCCCEEEEEECCCCCCCEEECCCCCCCEEEEEEEEC
IRGLQFHAAFNYIDTRVTSHGPLTDLNGDVLKGTSYNKHFPFVSPFQFIFDARYNWRKTT
CCCEEEEEEHHHHHHEECCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHCCCCCCEEEE
IGISSYFYSRAYSGISNSAAGGYYGMQYYSGGNNYESVLNSGYQCEAWCMTQHEGLLPWY
EEHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCHHHHHCCCCEEEEEEEECCCCCCEEE
WVWNIQVSQIFWENGRHRVTGSLQINNIFNMKYYFTGIGSSPAGLQPGPGRSVTAYLNYT
EEEEEEEEEEEECCCCEEEEEEEEEEEEEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEC
F
C
>Mature Secondary Structure
MHKKVLLALTASLICQESLFAKDKDYTLGKVSTAGKKDKSDYSGQVNLGYSGITAPKSWQ
CCCEEEHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCEEEECCCCCCCCCCCC
DEEVKKYTGSRTVISNKALTQQANQSIEEALQNVPGLQIRNATGVGAMPTIQIRGFGAGG
HHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCEEEEEEECCCC
SGHSDATLMLVNGIPVYMAPYAHIELDIFPVTFQAIDRIDVIKGGGSVQYGPNTYGGIVN
CCCCCEEEEEEECCCEEECCEEEEEEEEEEEEHHHHCCEEEEECCCCEEECCCCCCCHHE
IITKPIPNQWENQAAERITYWAKARNAGFAAPPDKTGDPSFIKSLGNNLLYNTYVRSGGM
EECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEECCCCE
INKHVGIQAQANWVRGQGFRDNSPSSISNYWLDGVYDINENNGIKAYYQYYDFAIAQPGS
EEEEECCEEECCEEECCCCCCCCCCCHHHHCCCEEEEECCCCCEEEEEEEEEEEEECCCC
LSEQDYKINRFANLRPLNQKGGRSQRFGAVYENRFGDLDKVGGTFSFTYYGQLMTRDFQV
CCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHCCCCHHHCCCEEEEEEEEEEEEEEEEE
SSSYNSANTVTCFSEAACRAAGLPAGYNLAVPYYATNYNGWAEVENPVRSINNAFEPKVS
ECCCCCCCEEEEEHHHHHHHCCCCCCCEEEECEEECCCCCCHHHHHHHHHHHHCCCCEEE
LIVNTGKVRQTFIMGLRFMTTTFLQRQYLNTNECPTKTSGEGAGFLCEGANVMSGWKPHI
EEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHH
KHGVYRNWNNWRNNYTAVYLSDRIEAWDGRFFIVPGLRYAFVQYNNENAANWMQIPEKDL
HCCCCCCCCCCCCCEEEEEEECCEECCCCCEEEECCCEEEEEEECCCCCCHHHCCCHHHH
RKIKHMNNWMPSTNIGFIPVQGDHNVLTYFNYQRSFVPPQLDVLSYGGAEYFTQHFDTVE
HHHHHHHCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCEEEEECCCHHHHHHHHHHHH
AGARYTYKDKFSFNADYFRIWARDFATGQYSVYTSGPMKGNVRPVNGYSQGVELELYYRP
CCCEEEEECCCCCCCCEEEEEEHHCCCCEEEEEECCCCCCCEEECCCCCCCEEEEEEEEC
IRGLQFHAAFNYIDTRVTSHGPLTDLNGDVLKGTSYNKHFPFVSPFQFIFDARYNWRKTT
CCCEEEEEEHHHHHHEECCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHCCCCCCEEEE
IGISSYFYSRAYSGISNSAAGGYYGMQYYSGGNNYESVLNSGYQCEAWCMTQHEGLLPWY
EEHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCHHHHHCCCCEEEEEEEECCCCCCEEE
WVWNIQVSQIFWENGRHRVTGSLQINNIFNMKYYFTGIGSSPAGLQPGPGRSVTAYLNYT
EEEEEEEEEEEECCCCEEEEEEEEEEEEEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEC
F
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2836368; 7610040; 9278503; 2254251; 2651410 [H]