Click here to switch to the map view.

The map label for this gene is 188528287

Identifier: 188528287

GI number: 188528287

Start: 1510751

End: 1512370

Strand: Reverse

Name: 188528287

Synonym: HPSH_07795

Alternate gene names: NA

Gene position: 1512370-1510751 (Counterclockwise)

Preceding gene: 188528288

Following gene: 188528286

Centisome position: 94.02

GC content: 30.12

Gene sequence:

>1620_bases
GTGAAAAAAGTGAAAGAAAAGACTTATTTTGAATGTCTTAATGAGATTTCTCAAAATAAACTTTTTAAGGGATTGTTAGG
ATACGGGATGTTTGCAGAAAGGATTCCTAATTTTCTGACATCAAAGCCTTTTTACAGATATTGCAAGAATAATAAAGATA
AGATATTCCCCAAACGCAAGATGGGGTATCAACATATTACTTACGAGAGAATAAGAGATATTGGAACGCCTAGATATTTT
GCTATCCCTAATCCTTTGGCTTATTATAATCAATGCAAAATTCTACGGGATAATTGGGATAAATTAAAGGAGTATTTTAA
AGAAAAGACAGATGGCAATACCCATAAGATCAGCTGCATCCACATTCAAAAAATTCCTAAAAATAAAAAAATTTTTCAAA
ACGATTATTCTAAAGATAGAGTTGCTATGAGAAAAAGTATTTTTGATATGGGCCATAAAGATATTTTTTGTGAGGGGAAA
TTAGGGAGGAGTATTCGTATTGGTGCTAGATACAAGCTAAAGGCTGATATATCCACTTGCTTCCCAAGCATTTATATGCA
TTCGATTCCTTGGGCAATAAGAGGTAAAGAAATTGCTAAAAAAGACAAAAATCATTGGAGCGATGAGATTGATGCCCAAA
CAAGAAACATGAATCATAAGGAAACTACGGGGATTCTTATTGGACCGCATAGTTCCAATTTGATTTCAGAAATTATTTTA
GTCGCCGTTGATGAGGATTTAAAAAATTTAAGAAAAGGGCAAAATAAAACAGAATACAGATATATTAGGCACATTGATGA
TTATACTTGCTATGTGAATTCAAGAGATGAGGCAGAACAATTTACAATCGATCTCGCAAAGTGTCTTAAAAGATATAACC
TTTCACTCAACCACAAAAAAACAAAAATTTTTGAACTCCCTTTGATGTATGAAGAAGAATGGATCAATCAGTTAAAAATT
TTTAAAATGGATGAGTATAAAGGGAAAATTAAATACCCTAGCGTTGTTGCTTTTTTAGATAAATCTATTGCATTGATAAG
GCAAAATGATAATAAGGCTTCTATTTTAAAATATGCTATAAAAATGCTCAACAAAAAGAAGATGACATATAATGCAAAAG
AATATTATTTTAGCACCTTGCACCATTTAGCTTTGCTCTACCCTTATTTAATCCCTTATATTGAAGGAGTGTTTGATAAC
AATAACTATCCGATCCAAACCAATCAAATTCAAGAAATTTCTAAGGATATATTTAAAGCAGGGTCAAAAAATAATAATTA
TGAAGCTTGTTCTTATGCGTTGTATTTCTCTCTAAAATATGATTTTGAGATTGAAAAAACTTGCCATAATATAATCCTTG
AAAGTAATGATTGTATTTTTATGCTTTTAGGATATTTGAGAGCAAGAAAAGATTCAGAGGGTTTTGCCATTGATAAATAT
TTAAAAAGAGCTGAAACAATGATTAAGTTAGAAGATAAAACATGTATAGATGATGAATTTTGGCTTTTTGCATATGAAGT
ATTGAGAATTGAAAACGAAAGTGCATTAAAAAAATGCAATGGTTGGAGTGAATTGTCAAAAAAAGGGGTTTCATTCATCA
AAAAAGAATTTCAAAAATAA

Upstream 100 bases:

>100_bases
GTCAAACCGTATGTTTTAAGAGCTATAAAAAAATACCATGAAATTGCTTTTCAATCTATATATTGGCAACAGGAAAACTT
TTAAAAAGAGAGTAATATCA

Downstream 100 bases:

>100_bases
ATTAAAAAGGTTACTAAATTCTCTTAATATGTGAAATAGCTCATTAGTTGAACCATCAAGTGGTTTTTGCTATTTTGAAA
GGCTAAATATCCATTGAAAA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 539; Mature: 539

Protein sequence:

>539_residues
MKKVKEKTYFECLNEISQNKLFKGLLGYGMFAERIPNFLTSKPFYRYCKNNKDKIFPKRKMGYQHITYERIRDIGTPRYF
AIPNPLAYYNQCKILRDNWDKLKEYFKEKTDGNTHKISCIHIQKIPKNKKIFQNDYSKDRVAMRKSIFDMGHKDIFCEGK
LGRSIRIGARYKLKADISTCFPSIYMHSIPWAIRGKEIAKKDKNHWSDEIDAQTRNMNHKETTGILIGPHSSNLISEIIL
VAVDEDLKNLRKGQNKTEYRYIRHIDDYTCYVNSRDEAEQFTIDLAKCLKRYNLSLNHKKTKIFELPLMYEEEWINQLKI
FKMDEYKGKIKYPSVVAFLDKSIALIRQNDNKASILKYAIKMLNKKKMTYNAKEYYFSTLHHLALLYPYLIPYIEGVFDN
NNYPIQTNQIQEISKDIFKAGSKNNNYEACSYALYFSLKYDFEIEKTCHNIILESNDCIFMLLGYLRARKDSEGFAIDKY
LKRAETMIKLEDKTCIDDEFWLFAYEVLRIENESALKKCNGWSELSKKGVSFIKKEFQK

Sequences:

>Translated_539_residues
MKKVKEKTYFECLNEISQNKLFKGLLGYGMFAERIPNFLTSKPFYRYCKNNKDKIFPKRKMGYQHITYERIRDIGTPRYF
AIPNPLAYYNQCKILRDNWDKLKEYFKEKTDGNTHKISCIHIQKIPKNKKIFQNDYSKDRVAMRKSIFDMGHKDIFCEGK
LGRSIRIGARYKLKADISTCFPSIYMHSIPWAIRGKEIAKKDKNHWSDEIDAQTRNMNHKETTGILIGPHSSNLISEIIL
VAVDEDLKNLRKGQNKTEYRYIRHIDDYTCYVNSRDEAEQFTIDLAKCLKRYNLSLNHKKTKIFELPLMYEEEWINQLKI
FKMDEYKGKIKYPSVVAFLDKSIALIRQNDNKASILKYAIKMLNKKKMTYNAKEYYFSTLHHLALLYPYLIPYIEGVFDN
NNYPIQTNQIQEISKDIFKAGSKNNNYEACSYALYFSLKYDFEIEKTCHNIILESNDCIFMLLGYLRARKDSEGFAIDKY
LKRAETMIKLEDKTCIDDEFWLFAYEVLRIENESALKKCNGWSELSKKGVSFIKKEFQK
>Mature_539_residues
MKKVKEKTYFECLNEISQNKLFKGLLGYGMFAERIPNFLTSKPFYRYCKNNKDKIFPKRKMGYQHITYERIRDIGTPRYF
AIPNPLAYYNQCKILRDNWDKLKEYFKEKTDGNTHKISCIHIQKIPKNKKIFQNDYSKDRVAMRKSIFDMGHKDIFCEGK
LGRSIRIGARYKLKADISTCFPSIYMHSIPWAIRGKEIAKKDKNHWSDEIDAQTRNMNHKETTGILIGPHSSNLISEIIL
VAVDEDLKNLRKGQNKTEYRYIRHIDDYTCYVNSRDEAEQFTIDLAKCLKRYNLSLNHKKTKIFELPLMYEEEWINQLKI
FKMDEYKGKIKYPSVVAFLDKSIALIRQNDNKASILKYAIKMLNKKKMTYNAKEYYFSTLHHLALLYPYLIPYIEGVFDN
NNYPIQTNQIQEISKDIFKAGSKNNNYEACSYALYFSLKYDFEIEKTCHNIILESNDCIFMLLGYLRARKDSEGFAIDKY
LKRAETMIKLEDKTCIDDEFWLFAYEVLRIENESALKKCNGWSELSKKGVSFIKKEFQK

Specific function: Unknown

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 63927; Mature: 63927

Theoretical pI: Translated: 9.64; Mature: 9.64

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKVKEKTYFECLNEISQNKLFKGLLGYGMFAERIPNFLTSKPFYRYCKNNKDKIFPKRK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCHHHHHCCCCCCCCCHHH
MGYQHITYERIRDIGTPRYFAIPNPLAYYNQCKILRDNWDKLKEYFKEKTDGNTHKISCI
CCCHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCCCEEEEEE
HIQKIPKNKKIFQNDYSKDRVAMRKSIFDMGHKDIFCEGKLGRSIRIGARYKLKADISTC
EEEECCCCCCHHHCCCCHHHHHHHHHHHHCCCCCEEEECCCCCEEEECCEEEEECCHHHH
FPSIYMHSIPWAIRGKEIAKKDKNHWSDEIDAQTRNMNHKETTGILIGPHSSNLISEIIL
HHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHCCCCCCCCCEEEECCCCHHHHHHHHH
VAVDEDLKNLRKGQNKTEYRYIRHIDDYTCYVNSRDEAEQFTIDLAKCLKRYNLSLNHKK
HEECHHHHHHHCCCCCCHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCC
TKIFELPLMYEEEWINQLKIFKMDEYKGKIKYPSVVAFLDKSIALIRQNDNKASILKYAI
EEEEECCCHHHHHHHHHEEEEEECCCCCCCCCCHHHHHHHHHHEEEEECCCHHHHHHHHH
KMLNKKKMTYNAKEYYFSTLHHLALLYPYLIPYIEGVFDNNNYPIQTNQIQEISKDIFKA
HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHC
GSKNNNYEACSYALYFSLKYDFEIEKTCHNIILESNDCIFMLLGYLRARKDSEGFAIDKY
CCCCCCCCEEEEEEEEEEEECCCHHHHHHHHEECCCCHHHHHHHHHHHCCCCCCCHHHHH
LKRAETMIKLEDKTCIDDEFWLFAYEVLRIENESALKKCNGWSELSKKGVSFIKKEFQK
HHHHHHHEEECCCCCCCCHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKKVKEKTYFECLNEISQNKLFKGLLGYGMFAERIPNFLTSKPFYRYCKNNKDKIFPKRK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCHHHHHCCCCCCCCCHHH
MGYQHITYERIRDIGTPRYFAIPNPLAYYNQCKILRDNWDKLKEYFKEKTDGNTHKISCI
CCCHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCCCEEEEEE
HIQKIPKNKKIFQNDYSKDRVAMRKSIFDMGHKDIFCEGKLGRSIRIGARYKLKADISTC
EEEECCCCCCHHHCCCCHHHHHHHHHHHHCCCCCEEEECCCCCEEEECCEEEEECCHHHH
FPSIYMHSIPWAIRGKEIAKKDKNHWSDEIDAQTRNMNHKETTGILIGPHSSNLISEIIL
HHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHCCCCCCCCCEEEECCCCHHHHHHHHH
VAVDEDLKNLRKGQNKTEYRYIRHIDDYTCYVNSRDEAEQFTIDLAKCLKRYNLSLNHKK
HEECHHHHHHHCCCCCCHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCC
TKIFELPLMYEEEWINQLKIFKMDEYKGKIKYPSVVAFLDKSIALIRQNDNKASILKYAI
EEEEECCCHHHHHHHHHEEEEEECCCCCCCCCCHHHHHHHHHHEEEEECCCHHHHHHHHH
KMLNKKKMTYNAKEYYFSTLHHLALLYPYLIPYIEGVFDNNNYPIQTNQIQEISKDIFKA
HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHC
GSKNNNYEACSYALYFSLKYDFEIEKTCHNIILESNDCIFMLLGYLRARKDSEGFAIDKY
CCCCCCCCEEEEEEEEEEEECCCHHHHHHHHEECCCCHHHHHHHHHHHCCCCCCCHHHHH
LKRAETMIKLEDKTCIDDEFWLFAYEVLRIENESALKKCNGWSELSKKGVSFIKKEFQK
HHHHHHHEEECCCCCCCCHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA