| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is 188528285
Identifier: 188528285
GI number: 188528285
Start: 1509357
End: 1510115
Strand: Reverse
Name: 188528285
Synonym: HPSH_07785
Alternate gene names: NA
Gene position: 1510115-1509357 (Counterclockwise)
Preceding gene: 188528286
Following gene: 188528278
Centisome position: 93.88
GC content: 27.54
Gene sequence:
>759_bases ATGGAAACTAAAGAAGAGAATAAAGATAAAAAGCTAGAAGAAATTATTGTATTGCTGTGCGAAGAGGGGGATTTGTCTAG TCAAAAAGATCAAATCATCAAAGATCTCAAAGAAATCTATGAAGGAGAATACAAGCATAAATACTCAAAAATCACAACTA TTATTTTAAATTCCACAAGGGATAAAGAGCAAGCCTTTATGATGCTCACACAAAATATAAAGGCACTCAAAGAGATTCAA AATAATAGAGAAGTTGAAAGTATTAAACCAAAACTAGAAAAGCTTTATGATCACATGAATTTAGAGTGTATCAGACTGCA AGATTTTGATGAGAAAATGAGTAGAGTTAAAGATGTTTCTATAAAGTTAGATGATCTAAATAAAAACTATAAAAAATTAA GCGAAGAATTGAATAAGCAACAAACACAATACATAACAATTTTAGGTATTTTTGCCTCTATTGTTTTAACATTTGTTGGG GGATTGGCGTTTTCCACTTCTGTTTTATCAAATATTGACAAAGCGAACGCCTATCGTTTGGTTTTTGTTATGGCTTTTAT AGCTTTATTTTTTGGGAATATTTTGTATCTACTTTTTTCTTTTTTATCAAAAATATCCTTATCAAAAGAGGAAAAAGATA AACAAGAAAATTTCAAAAAACCTATTTTTTGGTTTAATCTAATGGTTACAATTCTATTTATGATTGGTTTTTTTGGAGAA TTGCATATAATACAAAGATTAGTTTCTAAATATCTTTAA
Upstream 100 bases:
>100_bases GAGAGTCATAAAGAAGATGGCGCTTGGCATAAAAGCTTCAAAGAAGATAGAAAGGAAATCATTAGCAAAGATTTGATCAA ACAAGAAGCAAAACAAGCAA
Downstream 100 bases:
>100_bases TTCAACCCAACCCATTTTTTGCGTCCATTCCAATAAGACTTGATGCAAATTTCCCTTAATTGAGTGTTTTTTGCTATTTT GAAAATTTCAATACTCATTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 252; Mature: 252
Protein sequence:
>252_residues METKEENKDKKLEEIIVLLCEEGDLSSQKDQIIKDLKEIYEGEYKHKYSKITTIILNSTRDKEQAFMMLTQNIKALKEIQ NNREVESIKPKLEKLYDHMNLECIRLQDFDEKMSRVKDVSIKLDDLNKNYKKLSEELNKQQTQYITILGIFASIVLTFVG GLAFSTSVLSNIDKANAYRLVFVMAFIALFFGNILYLLFSFLSKISLSKEEKDKQENFKKPIFWFNLMVTILFMIGFFGE LHIIQRLVSKYL
Sequences:
>Translated_252_residues METKEENKDKKLEEIIVLLCEEGDLSSQKDQIIKDLKEIYEGEYKHKYSKITTIILNSTRDKEQAFMMLTQNIKALKEIQ NNREVESIKPKLEKLYDHMNLECIRLQDFDEKMSRVKDVSIKLDDLNKNYKKLSEELNKQQTQYITILGIFASIVLTFVG GLAFSTSVLSNIDKANAYRLVFVMAFIALFFGNILYLLFSFLSKISLSKEEKDKQENFKKPIFWFNLMVTILFMIGFFGE LHIIQRLVSKYL >Mature_252_residues METKEENKDKKLEEIIVLLCEEGDLSSQKDQIIKDLKEIYEGEYKHKYSKITTIILNSTRDKEQAFMMLTQNIKALKEIQ NNREVESIKPKLEKLYDHMNLECIRLQDFDEKMSRVKDVSIKLDDLNKNYKKLSEELNKQQTQYITILGIFASIVLTFVG GLAFSTSVLSNIDKANAYRLVFVMAFIALFFGNILYLLFSFLSKISLSKEEKDKQENFKKPIFWFNLMVTILFMIGFFGE LHIIQRLVSKYL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29590; Mature: 29590
Theoretical pI: Translated: 8.16; Mature: 8.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure METKEENKDKKLEEIIVLLCEEGDLSSQKDQIIKDLKEIYEGEYKHKYSKITTIILNSTR CCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCC DKEQAFMMLTQNIKALKEIQNNREVESIKPKLEKLYDHMNLECIRLQDFDEKMSRVKDVS CHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHH IKLDDLNKNYKKLSEELNKQQTQYITILGIFASIVLTFVGGLAFSTSVLSNIDKANAYRL EEHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VFVMAFIALFFGNILYLLFSFLSKISLSKEEKDKQENFKKPIFWFNLMVTILFMIGFFGE HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH LHIIQRLVSKYL HHHHHHHHHHCC >Mature Secondary Structure METKEENKDKKLEEIIVLLCEEGDLSSQKDQIIKDLKEIYEGEYKHKYSKITTIILNSTR CCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCC DKEQAFMMLTQNIKALKEIQNNREVESIKPKLEKLYDHMNLECIRLQDFDEKMSRVKDVS CHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHH IKLDDLNKNYKKLSEELNKQQTQYITILGIFASIVLTFVGGLAFSTSVLSNIDKANAYRL EEHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VFVMAFIALFFGNILYLLFSFLSKISLSKEEKDKQENFKKPIFWFNLMVTILFMIGFFGE HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH LHIIQRLVSKYL HHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA